BAC Information

Click to search

BAC

Clone NameMSMg01-355E24
Chromosome14 (Build37)
Map Location 94,953,221 - 95,100,762
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E24.T7 (MSMg01no355_e24.b1)MSMg01-355E24.TJ (MSMg01no355_e24.g1)
ACCAG465730AG465731
length760775
length of high quality
(start - end)		524 (49 - 572)391 (79 - 469)
definitionCHROMAT_FILE: MSMg01no355_e24.b1 PHD_FILE: MSMg01no355_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005CHROMAT_FILE: MSMg01no355_e24.g1 PHD_FILE: MSMg01no355_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,953,221 - 94,953,740)(95,100,372 - 95,100,762)
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTATTATATTAGGAATGTCATTCATAGTTTATTCATCAAAGA
AGATTAAGTGGGTTCTAAAGTACAATATTTAAAGTATTTAAATATCATAT
AAGGATTCATATTTCATATTTTTCAAAAATATTACTGTTGATATAATATT
AGAATGACTACTTAGGTTGTTTTGAATAGTAAGTGAAAATACACAAGACC
AAAATTTTGTAACTAGAAATTGAAATTATTAAATTTGAAAATTAAACCAT
TTAAAAATTCCAGAGCATAAGACATTCTAGTGTTTTTATTAATTGTTGTA
GAATTTTATAAGCTGTGTCTTGACCATTGACTACGTTTCCTTTTCCACTA
TGTCCTTCCCATAGTGTAAAACACATCACTTTCATACACAGAAATTAAAT
ACACTTATCCTTTAACAGGGCATCTGTATTTTCAAAGAAAGTATATAGAA
ATCATAGTTATATGAATGTTTAATATTGAAAGGCAGCAAAGTCATTGCTG
AGGTTAATTTATGGCATAAGGTAGGAGGTGTTAAAGCTCTAAAGCATTTG
GAGATTTATGGTGCCATGGCAACTAATTTAAAAAAAAAATCACAATAGAC
CTTGTAAAATGCTAACTCCACAAGGCACTGAGAAATCTTGAAATTGCAGA
CATTTAATTCTAATGCGTATTTAAATTTCTAGAAGGCTCTGCTAAATTTT
GTTTAATCTC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCTCCTACTAACTTTCCT
CATTAAGCCCAGAGAGGAAAGTTTGTGCCTAGTCGTTCTGTAATTTGTTG
TGTAGTGTTTCTTTGCCATCTCTGGAAGACATGCTCATTTCCAGAAGGGA
AATGGAGCAAGAAGAGATTTGGAGGAGAGGAGAGGAGAGGTCACAGTCCT
AGGAGGAGTGGGAGGATTGGAAATTGAGGTTCATATGAGGATGAATAAAA
ATTAATAACAATTGGACAATAGGTTAAGGCTTGACTGTATCAGAGAATCT
GAAAGAATGTTTAAAAAATATTATTAGAGGCCAGAGAAAAATATGAATCC
TGTAATGTGAGAAACCATTAAAACGATAATCCCTTGAATCATAAGAGTTA
GAAAATACAAAAACATTGCAAGTGTAATGTGGTTCACCACACAATCTCCT
TTATGATTTGGCCCTGTCAACTTTATATAAAGATAGATTATATTTCCCTT
TTCCTTTCCTTTTTTTTTTCCTGGATGCTTTCCTTATTTACATTTCAATG
GGGTTCCCTTTTTCCAGGGCCCTTTTTCCGAAATCTTTTTTTCTTCCCCC
CCCCCCAATTTTTGAAAAGGGTCCCCCTCCCCCCCTTTTCTCGTGCTTTC
TGGTCGGAGGTTTCCATAGTTTTTTGTTTTTGTAAAGAATATTTTGCCCT
CCCGCCCCATTATTATTGCTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e24.b1 MSMg01no355_e24.b1 CHROMAT_FILE:
MSMg01no355_e24.b1 PHD_FILE: MSMg01no355_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:43 2005
         (524 letters)



>mm_chr14_94953017_94953940
          Length = 924

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttattatattaggaatgtcattcatagtttattcatcaaagaagattaagtggg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattaaattaggaatgtcattcatagtttattcatcaaagaagattaagtggg 264

                                                                       
Query: 65  ttctaaagtacaatatttaaagtatttaaatatcatataaggattcatatttcatatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctaaagtacaatatttaaagtatttaaatatcatataaggattcatatttcatatttt 324

                                                                       
Query: 125 tcaaaaatattactgttgatataatattagaatgactacttaggttgttttgaatagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaaaaatattactgttgatataatattagaatgactacttaggttgttttgaatagtaa 384

                                                                       
Query: 185 gtgaaaatacacaagaccaaaattttgtaactagaaattgaaattattaaatttgaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgaaaatacacaagaccaaaattttgtaactagaaattgaaattattaaatttgaaaat 444

                                                                       
Query: 245 taaaccatttaaaaattccagagcataagacattctagtgtttttattaattgttgtaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaccatttaaaaattccagagcataagacattctagtgtttttattaattgttgtaga 504

                                                                       
Query: 305 attttataagctgtgtcttgaccattgactacgtttccttttccactatgtccttcccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attttataagctgtgtcttgaccattgactacgtttccttttccactatgtccttcccat 564

                                                                       
Query: 365 agtgtaaaacacatcactttcatacacagaaattaaatacacttatcctttaacagggca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgtaaaacacatcactttcatacacagaaattaaatacacttatcctttaacagggca 624

                                                                       
Query: 425 tctgtattttcaaagaaagtatatagaaatcatagttatatgaatgtttaatattgaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgtattttcaaagaaagtatatagaaatcatagttatatgaatgtttaatattgaaag 684

                                                   
Query: 485 gcagcaaagtcattgctgaggttaatttatggcataaggt 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcagcaaagtcattgctgaggttaatttatggcataaggt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_e24.g1 MSMg01no355_e24.g1 CHROMAT_FILE:
MSMg01no355_e24.g1 PHD_FILE: MSMg01no355_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:44 2005
         (391 letters)



>mm_chr14_95099974_95100764
          Length = 791

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttctcctactaactttcctcattaagcccagagaggaaagtttgtgcctagtcgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tttttctcctactaactttcctcattaagcccagagaggaaagtttgtgcctagtcgttc 730

                                                                       
Query: 61  tgtaatttgttgtgtagtgtttctttgccatctctggaagacatgctcatttccagaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgtaatttgttgtgtagtgtttctttgccatctctggaagacatgctcatttccagaagg 670

                                                                       
Query: 121 gaaatggagcaagaagagatttggaggagaggagaggagaggtcacagtcctaggaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaaatggagcaagaagagatttggaggagaggagaggagaggtcacagtcctaggaggag 610

                                                                       
Query: 181 tgggaggattggaaattgaggttcatatgaggatgaataaaaattaataacaattggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgggaggattggaaattgaggttcatatgaggatgaataaaaattaataacaattggaca 550

                                                                       
Query: 241 ataggttaaggcttgactgtatcagagaatctgaaagaatgtttaaaaaatattattaga 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ataggcaaaggcttgactgtatcagagaatctgaaagaatgtttaaaaaatattattaga 490

                                                                       
Query: 301 ggccagagaaaaatatgaatcctgtaatgtgagaaaccattaaaacgataatcccttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggccagagaaaaatatgaatcctgtaatgtgagaaaccattaaaacgataatcccttgaa 430

                                          
Query: 361 tcataagagttagaaaatacaaaaacattgc 391
           |||||||||||||||||||||||||||||||
Sbjct: 429 tcataagagttagaaaatacaaaaacattgc 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |