BAC Information

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BAC

Clone NameMSMg01-355F20
Chromosome14 (Build37)
Map Location 106,936,603 - 107,044,142
singlet/doubletdoublet
Overlap geneLOC668748
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Downstream geneLOC668752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355F20.T7 (MSMg01no355_f20.b1)MSMg01-355F20.TJ (MSMg01no355_f20.g1)
ACCAG465770AG465771
length745749
length of high quality
(start - end)		564 (50 - 613)406 (81 - 486)
definitionCHROMAT_FILE: MSMg01no355_f20.b1 PHD_FILE: MSMg01no355_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:48 2005CHROMAT_FILE: MSMg01no355_f20.g1 PHD_FILE: MSMg01no355_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,043,583 - 107,044,142)(106,936,603 - 106,937,008)
sequence
NNCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCATTGTATCAGACTATATGCTATCATGTATCCAACCAAT
AATCTCCATAAGTTTCCCTCACTTATCACTGAATTGGTAAATTTATGCTA
TTTTTTCAGCATAAATATGGGAAGAATATTTAATTTTTACTCTGCCAGTA
ACATAGATGCTCAAAGTGACAAGGAACGTCAAAGCTTAATGGTCGCTCGA
TGTCTACATTGCTTGAGAGTCTAAAGGTTGCCAAACTACTCTTCGATTTG
CTTAGTATTTTTCCATTTGTCTTCTTCTTGTATGCATTTTCTCTTTTAAT
AACGAAAAGAAGCAAGTATGAAGATTATCGTTATTATACAAATTAAAACT
TAATCCTAACAGAATTTAAACATTCACAATTAATACCAGATAAAAATGGT
TAACATAGAATATAAACTTTTGTCAAAATAATCTCGCAGTATATTACAGA
AGTTATTGGATTGTTTGTAAAACAGATCTTATATCACTTTGGGAATTCAG
ATAGGAAAATAGTCACTTTGGAATAGGATTTCAATTATTTCAATATTTGC
AGTAGTTTTGCCTTTGGGAAAGACAGGATGAACTGATATGCAACACTTTA
TAAACTGATAACAGAAAATTTTTACCAAAGACATACAAATTAAAAATTCT
TAATGTCCTCCCTCAAGAAAACTTAAGCACACCAAAGTATGCATN

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTAAGAACCTTATATTTG
TTAGAGACAACTCTATCATTGAGATGAATCCGTATTGAATTTACCTTCAT
TTTGTATATAAAAAACAAATAAAACAGATAAATATAAATGGTAGTGATAA
ATCCTTAGCCAGTGTATTAGTGAAAAGAATGGGAATAACACATGGATTAA
TATTTATCCTTCATACAGGTAAAATAATTATTAATGGAAAATTGTGATCC
TTTTGTCCTTATCAGTTATTAATAAGAGTTCAAGATAATTTTCTATTGAA
AGAATCAAATACAGTGTATGGCAATCTAGATCTTTAAACCTTCCTCATTT
TCTTTGTTTTTATTTTTCTATTTGTTTTCATTTATAGACATGTAAATGTA
TATATGTTTATAAATATGCATGATGTATATAAAGATGTACTGGGTGTCTT
ATGCTTTCCTTGAGAGACATGAACAAGCACCTATTTTTCCAAATAGAACA
TGGATAGACCAAACCAGAGATTTTTCTGGCTACCTAAAGGAGTTTGGTGA
AAAGTGTGGATTCCAAAGCAGCTATATCTCTAAAATAGTTTCACCCCCGA
ATTGGTGACTTTTTGAAAACATATTCAGGGAGGATTACCTTAAATCCTTT
TTTCTCTTTAAAAAACGCTTGAACTTTTTGAACAGGCTCAAAAAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_f20.b1 MSMg01no355_f20.b1 CHROMAT_FILE:
MSMg01no355_f20.b1 PHD_FILE: MSMg01no355_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:48 2005
         (564 letters)



>mm_chr14_107043379_107044342
          Length = 964

 Score = 1060 bits (548), Expect = 0.0
 Identities = 557/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccattgtatcagactatatgctatcatgtatccaaccaataatctccataagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattctccattgtatcagactatatgctatcatgtatccaaccaataatctccataagt 705

                                                                       
Query: 65  ttccctcacttatcactgaattggtaaatttatgctattttttcagcataaatatgggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttccctcacttatcactgaattggtaaatttatgctattttttcagcataaatatgggaa 645

                                                                       
Query: 125 gaatatttaatttttactctgccagtaacatagatgctcaaagtgacaaggaacgtcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gaatatttaatttttactctgccagtaacatagatgctcaaagtgacaaggaacgtcaaa 585

                                                                       
Query: 185 gcttaatggtcgctcgatgtctacattgcttgagagtctaaaggttgccaaactactctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 584 gcttaatggtcgctcgatgtctacattgcttgagagtctaaaggttgccaaactactttt 525

                                                                       
Query: 245 cgatttgcttagtatttttccatttgtcttcttcttgtatgcattttctcttttaataac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgatttgcttagtatttttccatttgtcttcttcttgtatgcattttctcttttaataac 465

                                                                       
Query: 305 gaaaagaagcaagtatgaagattatcgttattatacaaattaaaacttaatcctaacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaaaagaagcaagtatgaagattatcgttattatacaaattaaaacttaatcctaacaga 405

                                                                       
Query: 365 atttaaacattcacaattaataccagataaaaatggttaacatagaatataaacttttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atttaaacattcacaattaataccagataaaaatggttaacatagaatataaacttttgt 345

                                                                       
Query: 425 caaaataatctcgcagtatattacagaagttattggattgtttgtaaaacagatcttata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caaaataatctcgcagtatattacagaagttattggattgtttgtaaaacagatcttata 285

                                                                       
Query: 485 tcactttgggaattcagataggaaaatagtcactttggaataggatttcaattatttcaa 544
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcactttggaaattcagataggaaaatagtcactttggaataggatttcaattatttcaa 225

                               
Query: 545 tatttgcagtagttttgcct 564
           |||||||| |||||||||||
Sbjct: 224 tatttgcaatagttttgcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_f20.g1 MSMg01no355_f20.g1 CHROMAT_FILE:
MSMg01no355_f20.g1 PHD_FILE: MSMg01no355_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:48 2005
         (406 letters)



>mm_chr14_106936403_106937208
          Length = 806

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctaagaaccttatatttgttagagacaactctatcattgagatgaatccgtattgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctaagaaccttatatttgttagagacaactctatcattgagatgaatccgtattgaat 260

                                                                       
Query: 61  ttaccttcattttgtatataaaaaacaaataaaacagataaatataaatggtagtgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaccttcattttgtatataaaaaacaaataaaacagataaatataaatggtagtgataa 320

                                                                       
Query: 121 atccttagccagtgtattagtgaaaagaatgggaataacacatggattaatatttatcct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 atccttagccagtgtattagtgaaaagaatgggaataacccatggattaatatttatcct 380

                                                                       
Query: 181 tcatacaggtaaaataattattaatggaaaattgtgatccttttgtccttatcagttatt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatacaggtacaataattattaatggaaaattgtgatccttttgtccttatcagttatt 440

                                                                       
Query: 241 aataagagttcaagataattttctattgaaagaatcaaatacagtgtatggcaatctaga 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 aataagagttcaagataattttctattgatagaatcaaatacagtgtatggcaatctaga 500

                                                                       
Query: 301 tctttaaaccttcctcattttctttgtttttatttttctatttgttttcatttatagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttaaaccttcctcattttctttgtttttatttttctatttgttttcatttatagaca 560

                                                         
Query: 361 tgtaaatgtatatatgtttataaatatgcatgatgtatataaagat 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaaatgtatatatgtttataaatatgcatgatgtatataaagat 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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