BAC Information

Click to search

BAC

Clone NameMSMg01-356K21
Chromosome14 (Build37)
Map Location 63,289,323 - 63,289,637
singlet/doubletsinglet
Overlap geneE130113E03Rik
Upstream geneLOC668253, Dleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059
Downstream geneInts6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356K21.T7 (MSMg01no356_k21.b1)MSMg01-356K21.TJ (MSMg01no356_k21.g1)
ACCAG466763AG466764
length777806
length of high quality
(start - end)		507 (32 - 538)315 (139 - 453)
definitionCHROMAT_FILE: MSMg01no356_k21.b1 PHD_FILE: MSMg01no356_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:28 2005CHROMAT_FILE: MSMg01no356_k21.g1 PHD_FILE: MSMg01no356_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTGCT
GAGTTTACACAGCAAAGAAACGAGAAGCTGGAACTCGAACACCATGAGCC
TGTGTCCCCCAACCCAAAGGTCCAAAGGCACACCTCTTACTCATGAGTCA
GAGGCATGGACAAATGCTTAACTTAAGATTACAGCAATGCCACCAGCAAT
GGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCT
GAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTAGAGTCTTAGGGT
TGTTTTGGTTTGCATTTCTCTGATAACTAAGGATGTTGAACATTTTTTTA
GGTGCTTCTCAGCCATTTGGAATTCCTCAGTTGAGAATTCTTTGTTTAGC
TCTGTATCCCACTTATAATAGAGTTATTTGGTTCTCTGGAGTCTAACTTT
TTGAGTTTTTTGTGTTTATTGGATATTAGCCCCCTATTGGATTTAGGATT
AGTAAAGATCTTTTCCCAATCTGTTGGGTGCTTTTTGTCTTATTGACAGT
GTCCTTTGCCTTACAGAAGTTCTGCAATTTTATGAGGTCCCATGTGTCCA
TTCTTGATCTTACAGCCATTGGTGTTATGTTCAAGAAAATTTTTCCCTGG
CCCAAATGTTCGAAGGTCTTCCCCACTGTCCCCTCCATGAAGTTTCCNGG
CCCCCGGGTTTATGTTAAGGCCCTTGAACCCCTTGGAATTAACCTTTTCC
ACGGAAATAAAAAGGGACATTTCCCCN

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACTCTTGG
GTCTGTGAGAAAGGAGTGTTCATAAGGGCCTGCACAGCTCCCAACAGGTT
GTCTCATAAGATGTGTCCATGCAAAAGTCCCTCACTGGAAATGACATAGC
CGCTCTAGTCAAAATCCACCTAACTCTACAGCTTAAAAGTTGGACAGAAA
ACATGTAGATCACAAACAAATCTAGCTGGAGGAGAGTCTGCCAGTGCCTT
GGAAATGGCAAAGCAGTGTAAAGCTTTGTGTAGCCCTAGAATTCACTCTG
TAGACCAGGCAGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAA
GTGCTGGGATTAAAGGTGTGCGCCACCACTGCCTGGCATGCTTTGACTTC
TTAATTCAGGGACATTGCTGAGTTCTGGAGGAGAAGCTAGACCTGGGGAT
GTGACACAGAGGAATTTTTATGGGGAACCCCAGAGTTCTGTGCGAAATTG
TATAAGGAAAGGAACTGTTCAAGGTGTTGGCCCCCCACNCAAAAATCCGG
GCTGGGATAAAAACTGACCCAAAACAATTCTGTGTGAAAGGGTTAATCTG
CCTTCCTATTTATATCCCCCACCGCCAAAGTAATGGCACATTCCCCGCCG
TGTTCCCAAGCTTTATTTATAACAAAATTCTGTATGCCCTGCTTTTCCTC
CTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_k21.g1 MSMg01no356_k21.g1 CHROMAT_FILE:
MSMg01no356_k21.g1 PHD_FILE: MSMg01no356_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:29 2005
         (315 letters)



>mm_chr14_63289203_63289917
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcactcttgggtctgtgagaaaggagtgttcataagggcctgcacagctcccaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttcactcttgggtctgtgagaaaggagtgttcataagggcctgcacagctcccaacagg 376

                                                                       
Query: 61  ttgtctcataagatgtgtccatgcaaaagtccctcactggaaatgacatagccgctctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgtctcataagatgtgtccatgcaaaagtccctcactggaaatgacatagccgctctag 316

                                                                       
Query: 121 tcaaaatccacctaactctacagcttaaaagttggacagaaaacatgtagatcacaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaaaatccacctaactctacagcttaaaagttggacagaaaacatgtagatcacaaaca 256

                                                                       
Query: 181 aatctagctggaggagagtctgccagtgccttggaaatggcaaagcagtgtaaagctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatctagctggaggagagtctgccagtgccttggaaatggcaaagcagtgtaaagctttg 196

                                                                       
Query: 241 tgtagccctagaattcactctgtagaccaggcaggcctcgaactcagaaatccacctgcc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 195 tgtagccctagaattcactctgtagaccaggcaggccttgaactcagaaatccacctgcc 136

                          
Query: 301 tctgcctcccaagtg 315
           |||||||||||||||
Sbjct: 135 tctgcctcccaagtg 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |