BAC Information

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BAC

Clone NameMSMg01-357B13
Chromosome14 (Build37)
Map Location 101,122,799 - 101,123,240
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357B13.T7 (MSMg01no357_b13.b1)MSMg01-357B13.TJ (MSMg01no357_b13.g1)
ACCAG467081AG467082
length768774
length of high quality
(start - end)
522 (41 - 562)441 (72 - 512)
definitionCHROMAT_FILE: MSMg01no357_b13.b1 PHD_FILE: MSMg01no357_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:00 2005CHROMAT_FILE: MSMg01no357_b13.g1 PHD_FILE: MSMg01no357_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAAACCAGTAGC
CAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA
AATCGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAG
TATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATA
AACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAAT
GGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTTTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACT
CTAACTAAGGAAGTAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAG
AAAGAAATTATAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATG
GATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCCAAAGCAATCT
ACAGAATCAATGGCAACCCCCCTCCAAATTCCTACTCAATTCTTCAACGA
AATAAAAAGAAGAATTTTGCAATTCTTCTGGGGATACCAAAAACCTAGGA
AAGGAAAATCCTCTTCAG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGCAGGAAGAAGATCAAATCTCACTGT
TCTATGTAGATTTTTGACAGGATGGCTTGGCTTGCACCTCAGATGAATTA
TCTACTTGAGAGCTGTGGTGGAGAGAGGAACGATTAGAGAAAAAGCAAAT
GAGATAAAGTTAAGAAAGAAAAGCACTGGTAAAGTTCAAAGTCAGAGCTA
CACTTGGTTTTAGAAGAAAATGACATTAAAATAACTTGGATTTTCTTTGA
GTATGATGGAAAATTGTTGAACTAGACAGAGGTAGTGTTTGGTCAGCATT
ATGAACATACAAATTTTCATCAAATTGTTAATTTTATATTTACCTCTAGT
GGTTTGAATATGCTTGATCCACAGAGAGTGGTACTGTTAGAAGGTGTGGC
CTTGTCGGAGGAAGGGTGTCACTGTGGGAGTGGGCTTTGATACCCCCACT
CCTAGCCACATGGGAGAGAGTCTTCTCTTGTTTGCCTTCCGAACAAGATG
TAGATCTCTTCATTCCTCCAGTGCCATGCCTATTTGGATGGTGGCTTGCT
TCCCCCCGTGATGAAATTGGCCTGACCTTTAAACCAGGAATCCACGTCTC
ACTTACTGGTTTCCTCTATAAGAAAGCCCTCTAACATTGTGTGCCTTTTT
CAGCTTGGGCAACCCCACTTTTTACCTTTTTTTTTTGTATCAATTGTATT
TATCTACCTTTTCATTGCTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_b13.g1 MSMg01no357_b13.g1 CHROMAT_FILE:
MSMg01no357_b13.g1 PHD_FILE: MSMg01no357_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:00 2005
         (441 letters)



>mm_chr14_101122599_101123440
          Length = 842

 Score =  739 bits (382), Expect = 0.0
 Identities = 427/442 (96%), Gaps = 1/442 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcaggaagaagatcaaatctcactgttctatgtagatttttgacaggatggcttggc 60
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 201 aaagcaggaagaagatcaaatctcactcttctatgtagattcttgacaggacggcttggc 260

                                                                       
Query: 61  ttgcacctcagatgaattatctacttgagagctgtggtggagagaggaacgattagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcacctcagatgaattatctacttgagagctgtggtggagagaggaacgattagagaa 320

                                                                       
Query: 121 aaagcaaatgagataaagttaagaaagaaaagcactggtaaagttcaaagtcagagctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcaaatgagataaagttaagaaagaaaagcactggtaaagttcaaagtcagagctac 380

                                                                       
Query: 181 acttggttttagaagaaaatgacattaaaataactt-ggattttctttgagtatgatgga 239
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 381 acttggttttagaagaaaatgacattaaaataactttggattttctttgggtatgatgga 440

                                                                       
Query: 240 aaattgttgaactagacagaggtagtgtttggtcagcattatgaacatacaaattttcat 299
            ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 441 taattgttgaactagacagaggtagtgtttggacagcattatgatcatacaaattttcat 500

                                                                       
Query: 300 caaattgttaattttatatttacctctagtggtttgaatatgcttgatccacagagagtg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 caaattgttaattttatatttacctctagtggtttgaatatgcttgatccacggggagtg 560

                                                                       
Query: 360 gtactgttagaaggtgtggccttgtcggaggaagggtgtcactgtgggagtgggctttga 419
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gtactgatagaaggtgtggccttgacggaggaagggtgtcactgtgggagtgggctttga 620

                                 
Query: 420 tacccccactcctagccacatg 441
           || |||  ||||||||||||||
Sbjct: 621 taaccctgctcctagccacatg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space:   359856
Effective search space used:   359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)