BAC Information

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BAC

Clone NameMSMg01-357M23
Chromosome14 (Build37)
Map Location 25,464,977 - 25,465,265
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
Downstream geneLOC669315, LOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357M23.T7 (MSMg01no357_m23.b1)MSMg01-357M23.TJ (MSMg01no357_m23.g1)
ACCAG467619AG467620
length758695
length of high quality
(start - end)
318 (65 - 382)---
definitionCHROMAT_FILE: MSMg01no357_m23.b1 PHD_FILE: MSMg01no357_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:54 2005CHROMAT_FILE: MSMg01no357_m23.g1 PHD_FILE: MSMg01no357_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGGGTGTACTAGACATGCAGAGGCCCCTTCCCACTGTTCCACAAACCA
ATATATGGTGCAAGCCTGGCCAGCCCTGTCTATCCTCCCTTCTTGAGCTA
CTCTGTACAGAGACCTGGGGCCATCATGCCAGCCTGGGCCTGGAATCTCC
TATTTCAGCCCTCCAAACTGATTGTTTTTAAGCTCCTGTCCCTTCAGATT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTTTTTTTCTCTCTCTCTCTCTGTCTCTCTCTGT
CTCTCTCTTTCTCTCCCTCCCTCTCTCTTTCTCTCTAATCTAAAAAATGA
TTAATTGTGTTTCACTTTTTATATTATAAAATCCTTTATCACTCTATACT
GTATTCAATTACACCATTTTGCCCTATAACGTCTTTATATATTAGACGTC
CTCATTCCTTCATCACTATAGAGAACCCTCTTGCCCTAGTAAAAATCCTG
GTCACTTCCTAACCTCCTTATCCCCCTTGACTTTCCGTCCGGTGTCTGAA
CCTTCTACATAATGGCTAATCTTACCTATATTTTTTGTCCAATTTTCTTT
CAATGCCGAATTTTTTTTTCCTATTCAACGACTAATAATCCTCCTTACCG
CTTTCTTTTTCATTCCCTATGCCTCCTTTATCCCTCCATTTCTTTTCTCT
CACCTTTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCTGTCGGGTGAGTCTACGCATGCTAGA
GGAAGGNCTGGTACACACTCAGCGGCNAATGAACTCATGGGGCACTCGTC
ATTAGTCCTCAACTCAGTGTGCAATANCATCCTAATGGGCCCTGGGAANG
GCCAGAAAACAGGGTGGTTACTCAACTGCCTCCCTGAAAAGGCCTGGGTT
AACTTCCCTTTTAGTTCCTAAAAGGGGGGTCCCCCTTTGAGAAAAGGAAC
AAAGAACAGTTTTTCCCCCCCCCCTTTAAACTTTTATAAAAGAAACAAGA
GACGNNGCCGACGCCCCTCTGNNAAAAATGTGGGGCCCCGGCCCTTTTTT
AATANNNTCCGNGGTGATAATACCCCAAAAAAGAAATTTGTTTTGTTTTA
AAAAGAAAAATGTATCTCCCTCCCCGGAGAACAAGTTNTTTTTTCTCACC
NCCCGTCTATAAAGANNNAATGTATNNTTTTAGCGCGNCTCGGAAAAANA
ATAAAAACACACGGCNTCGAACGAACNNNNTCCAACTTATTCAATTNNNN
NTCAAATCAANNNNNNNNNNNNNAAACTCCCAAAGGCCCCCCCCGCCCCN
NNNNNTNNNNNNNNAGCCTTAGAGGCCGAACACGCCGGCNCTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_m23.b1 MSMg01no357_m23.b1 CHROMAT_FILE:
MSMg01no357_m23.b1 PHD_FILE: MSMg01no357_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:54 2005
         (318 letters)



>mm_chr14_25464881_25465598
          Length = 718

 Score =  497 bits (257), Expect = e-145
 Identities = 285/301 (94%), Gaps = 12/301 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgcagaggccccttcccactgttccacaaaccaatatatggtgcaagcctggccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatgcagaggccccttcccactgttccacaaaccaatatatggtgcaagcctggccagc 326

                                                                       
Query: 61  cctgtctatcctcccttcttgagctactctgtacagagacctggggccatcatgccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 cctgtctatcctcccttcttgagctactctgtacagagacctggggccatcgtgccagcc 266

                                                                       
Query: 121 tgggcctggaatctcctatttcagccctccaaactgattgtttttaagctcctgtccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggcctggaatctcctatttcagccctccaaactgattgtttttaagctcctgtccctt 206

                                                                       
Query: 181 cagattctctctctctctctctctctctctctctctctctctctctctctctctctctct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 cagattctctctctctctctctctctctctctctctctctctctctctctctctctttct 146

                                                                       
Query: 241 ctctctctctctctttttttctctctctctctctgtctctctctgtctctctctttctct 300
           |||||||||||| |      |||||||| |||||||||||||||      ||||||||||
Sbjct: 145 ctctctctctctgt------ctctctctgtctctgtctctctct------ctctttctct 98

            
Query: 301 c 301
           |
Sbjct: 97  c 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)