BAC Information

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BAC

Clone NameMSMg01-359F02
Chromosome14 (Build37)
Map Location 54,803,000 - 54,803,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545
Downstream geneDad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F02.T7 (MSMg01no359_f02.b1)MSMg01-359F02.TJ (MSMg01no359_f02.g1)
ACCAG468760AG468761
length741734
length of high quality
(start - end)
487 (29 - 515)444 (59 - 502)
definitionCHROMAT_FILE: MSMg01no359_f02.b1 PHD_FILE: MSMg01no359_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:47 2005CHROMAT_FILE: MSMg01no359_f02.g1 PHD_FILE: MSMg01no359_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTATTGTCATT
TCAACAGTGCCCTTAAGAAAGCCTTGCATTGGCCAGGCTGCCAACTGAGG
TGAGGTCTCAGATGGGGATAGTGGTACCTTAACTCCTAGAGCTCAGGAGT
CAGAGGCAGGCAGAGCTCTATGAGTTCAAGGCTAGACTAGTCTACACAGT
GAGTTCCAGACTAGCCAGGGATACACAGTGAAAGGTGTTGGCTTAGATTT
TTTTCAAAACCTACTTTTAGTAAGGGTTCTTAAGTGCTTCAACCTCCCTT
CTAGCCCCCCACCCACCAGAGGTAGTGGAAAAGAAGGGCTATTAGTATAC
GTGGGAAGTAGACCTGTTTAGAAATTGTTCTTTGGAGGCAAGTCCAATCT
GCATTGTCAGCAGTCCAGTTCAGTAATATCAAGATAGCAAACATGAATCA
GCAGTGGCATGACCCAACAGAAACAGCCAAGTGTCAGCCAAATTGGCACG
AGTGACCATGACCAGCAGGGACACTAGGAGAAGTTCTCTGCTGTGCATTT
CTCAACAAAGTGAAGAGCCGTATAGATGAAGAGGAAAGATATGCGAAGCG
GTGGAAAGCTAGGTATGCGAGCCCCTTGTTACTGTTACATCACATGGCCT
CCCCGGGTGAGGACTAGCAGCTGACATCCCTCTGGGGATTGGTACGAGCC
CCCTAAAGGGGCAGGAAGCCCTCCGAGCACTTTTTGAAGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACATGTACACAAAGCAGAGTTAGGCTTCAGCACTTAGTGGGT
CTACTGTCTGGTTCCCACACTCTCCTACCCCTGCTCCCTTCATCTCTAAC
ACCTATATAATCCTCTTTTCTTTCTCCTTTGAATTTCTATCTGCCATGCC
TAGTCACAACCCAAGCACATACCACTGCCTGAGCAATCCTCGGATGGATG
GCTCGGGGACTGGGAGAGTCCTCTTTAGTGGTCCTTCAGCAGAACCCCTA
AAGAAGTGCAGGTTGTATCCTAGTTCCTAGGTGGCTACTAGAAGACTGGG
GAGAGGCCAGGATGAAGAGAAGCCTCAGGAGTCAGGAACAGCATCTCTCT
GGTGATACATACGTCTGAATCTCCTCTCGGGCCTAAAATGTTTTAGCTTC
CACCTTGAGCCCATGTGTGGCTCTGAGGAAGTTTTTGTTGTAGAGTCAGT
CACTGTGGTAGACAGGCTTTGCAAGTGCGCTGACATTTGGATCTGGCACA
AAAGTCATTCCATGTCTACCATGTAAGTGTGGCTTCTCCTGTTCCCTGGG
TTTAAAGTAATACTGTTCTTTGCATCTTCACAATATTTCTAAGAGGAAAC
ACTGTCTGGTTCTATAGAACCTGCCACTTAACTTTTAAAAGGGTCCTACT
TTTTTTTCTAAAACAACCATACTGTATTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f02.g1 MSMg01no359_f02.g1 CHROMAT_FILE:
MSMg01no359_f02.g1 PHD_FILE: MSMg01no359_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:47 2005
         (444 letters)



>mm_chr14_54802800_54803643
          Length = 844

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgtacacaaagcagagttaggcttcagcacttagtgggtctactgtctggttcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgtacacaaagcagagttaggcttcagcacttagtgggtctactgtctggttcccac 260

                                                                       
Query: 61  actctcctacccctgctcccttcatctctaacacctatataatcctcttttctttctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctcctacccctgctcccttcatctctaacacctatataatcctcttttctttctcct 320

                                                                       
Query: 121 ttgaatttctatctgccatgcctagtcacaacccaagcacataccactgcctgagcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaatttctatctgccatgcctagtcacaacccaagcacataccactgcctgagcaatc 380

                                                                       
Query: 181 ctcggatggatggctcggggactgggagagtcctctttagtggtccttcagcagaacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcggatggatggctcggggactgggagagtcctctttagtggtccttcagcagaacccc 440

                                                                       
Query: 241 taaagaagtgcaggttgtatcctagttcctaggtggctactagaagactggggagaggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagaagtgcaggttgtatcctagttcctaggtggctactagaagactggggagaggcc 500

                                                                       
Query: 301 aggatgaagagaagcctcaggagtcaggaacagcatctctctggtgatacatacgtctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggatgaagagaagcctcaggagtcaggaacagcatctctctggtgatacatacgtctga 560

                                                                       
Query: 361 atctcctctcgggcctaaaatgttttagcttccaccttgagcccatgtgtggctctgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctcctctcgggcctaaaatgttttagcttccaccttgagcccatgtgtggctctgagg 620

                                
Query: 421 aagtttttgttgtagagtcag 441
           |||||||||||||||||||||
Sbjct: 621 aagtttttgttgtagagtcag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)