BAC Information

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BAC

Clone NameMSMg01-359G13
Chromosome14 (Build37)
Map Location 49,922,493 - 50,094,846
singlet/doubletdoublet
Overlap geneSlc35f4
Upstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359G13.T7 (MSMg01no359_g13.b1)MSMg01-359G13.TJ (MSMg01no359_g13.g1)
ACCAG468830AG468831
length742752
length of high quality
(start - end)		520 (28 - 547)443 (58 - 500)
definitionCHROMAT_FILE: MSMg01no359_g13.b1 PHD_FILE: MSMg01no359_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:53 2005CHROMAT_FILE: MSMg01no359_g13.g1 PHD_FILE: MSMg01no359_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,094,330 - 50,094,846)(49,922,493 - 49,922,935)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCAACTACACTTA
AGCAGCATTTTAAGGTTTTATCATTAAGTGTGAGACTTGCTATGGGCTTT
TCGTAAAAGCCTTTTTTCTCAGGCTATCAGCAGAATTGCTGCAATCCTCT
GACAAGTGTAAAGCAGCTGGGTTATTGGAACAGGCCACAGTCTTCACATG
CAATTGGTCCCGAGACTGCAATTGATACTCATCATCTCTCTCTTGTGTAA
CCGATTCTAGAGTCCATTCACTCAGACACAGTGGCTAAGCAGATCTAAGC
TGCTCACTCGTTTGCTCATTTGGTCAATAACCCACATCAGCATCCCTGGG
AAGTCTAAACTTTTGTTTACTTTTATTTTTAGCACCTGCTGGACCAGGGT
TGCAGAAATATCCCATTGAACATTACTACCAGGCATAGAAGCATAATGAC
AACCCTCTCCTGTAAGGAATTTCCTGGTATCCAAACATCCTCAGTTCTTC
TCAGACTGCATAGCATCAATCCTTGGTCTCTAGAGTGATCAAGGTGAATA
ATGTTGACCCTGACCAGGACTTTTTCTTTGCCTGGAGGCTCTCTGGAGTG
CTTGAGGGACCATATGACTACCGCTCATAAAGTTATCATAACTTCCACAT
CAAAGGGGTGTGACTGTATCCAGCGGTAGCAAAAAACCAATCTTTTAACC
CAAAAACAAAATGGGAATGTTTTTAAAAAAAAAACCCTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATGCACATGGAAGTGGCCAAAGGGAAGTGACATTTTGGTTAT
GATTGGCTCCAGCTAGACTATTTCTGGCCAGGAAATGATCAGAGCAGTTT
TAATTAGTATACTTTGATCTTATGGCAACACTACCAACTTCCAAATATAC
TATTGATTTTCACTCAACTTAGAGGTAATGAGAGATGATAACCATACAGT
TTTGGCCTTGGGAAGCAGAACTCCAGGGACCAACATTTAATGCTTGATCT
TTTTCTTGAATGTTTTCAGTTTAAGGACCTTCCCTGAGGGATCTAGACTG
AAGTGGAAAAAGATGAGCCAATCGATGATCTTGCTGGAATCAGGACTTTT
TTTTTTCCCTTGGAACTGCAGTATTGCTACTGTTTCCAGAGTCACGTTGG
CTTAAAAGGTCAGGAGAAGGGCAATGCTGGCCCTGCAGGGCTAGTACATT
GGGTAAATGTGGAACAAAAGAGTGATTGACACTGGGCAGTATATGCAAGA
AGCAGAATGAAGCTGGCTTTATTCAGAATAAGCTCTGGGATTTGGGGGTT
GCCGTTTTCAAAACTTTGAGAGGAGGAACAGGGTCCCCCTTAATCCAGAA
CAGGAAGATGGAAATTTGGAAAGGGGGGGCGGGGAGTCCCTCTCCAATTT
TTGAACACCCACGAAATACCCTGCGGGACCCTTATTGGTTTTTACGCGGG
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_g13.b1 MSMg01no359_g13.b1 CHROMAT_FILE:
MSMg01no359_g13.b1 PHD_FILE: MSMg01no359_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:53 2005
         (520 letters)



>mm_chr14_50094127_50095046
          Length = 920

 Score = 1000 bits (517), Expect = 0.0
 Identities = 517/517 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgcaactacacttaagcagcattttaaggttttatcattaagtgtgagacttgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggaattcgcaactacacttaagcagcattttaaggttttatcattaagtgtgagacttgc 661

                                                                       
Query: 64  tatgggcttttcgtaaaagccttttttctcaggctatcagcagaattgctgcaatcctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tatgggcttttcgtaaaagccttttttctcaggctatcagcagaattgctgcaatcctct 601

                                                                       
Query: 124 gacaagtgtaaagcagctgggttattggaacaggccacagtcttcacatgcaattggtcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gacaagtgtaaagcagctgggttattggaacaggccacagtcttcacatgcaattggtcc 541

                                                                       
Query: 184 cgagactgcaattgatactcatcatctctctcttgtgtaaccgattctagagtccattca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cgagactgcaattgatactcatcatctctctcttgtgtaaccgattctagagtccattca 481

                                                                       
Query: 244 ctcagacacagtggctaagcagatctaagctgctcactcgtttgctcatttggtcaataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctcagacacagtggctaagcagatctaagctgctcactcgtttgctcatttggtcaataa 421

                                                                       
Query: 304 cccacatcagcatccctgggaagtctaaacttttgtttacttttatttttagcacctgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cccacatcagcatccctgggaagtctaaacttttgtttacttttatttttagcacctgct 361

                                                                       
Query: 364 ggaccagggttgcagaaatatcccattgaacattactaccaggcatagaagcataatgac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggaccagggttgcagaaatatcccattgaacattactaccaggcatagaagcataatgac 301

                                                                       
Query: 424 aaccctctcctgtaaggaatttcctggtatccaaacatcctcagttcttctcagactgca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaccctctcctgtaaggaatttcctggtatccaaacatcctcagttcttctcagactgca 241

                                                
Query: 484 tagcatcaatccttggtctctagagtgatcaaggtga 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 240 tagcatcaatccttggtctctagagtgatcaaggtga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_g13.g1 MSMg01no359_g13.g1 CHROMAT_FILE:
MSMg01no359_g13.g1 PHD_FILE: MSMg01no359_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:54 2005
         (443 letters)



>mm_chr14_49922293_49923135
          Length = 843

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcacatggaagtggccaaagggaagtgacattttggttatgattggctccagctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcacatggaagtggccaaagggaagtgacattttggttatgattggctccagctaga 260

                                                                       
Query: 61  ctatttctggccaggaaatgatcagagcagttttaattagtatactttgatcttatggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatttctggccaggaaatgatcagagcagttttaattagtatactttgatcttatggca 320

                                                                       
Query: 121 acactaccaacttccaaatatactattgattttcactcaacttagaggtaatgagagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactaccaacttccaaatatactattgattttcactcaacttagaggtaatgagagatg 380

                                                                       
Query: 181 ataaccatacagttttggccttgggaagcagaactccagggaccaacatttaatgcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaccatacagttttggccttgggaagcagaactccagggaccaacatttaatgcttga 440

                                                                       
Query: 241 tctttttcttgaatgttttcagtttaaggaccttccctgagggatctagactgaagtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttttcttgaatgttttcagtttaaggaccttccctgagggatctagactgaagtgga 500

                                                                       
Query: 301 aaaagatgagccaatcgatgatcttgctggaatcaggacttttttttttcccttggaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagatgagccaatcgatgatcttgctggaatcaggacttttttttttcccttggaact 560

                                                                       
Query: 361 gcagtattgctactgtttccagagtcacgttggcttaaaaggtcaggagaagggcaatgc 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 gcagtattgctactgtttccagagtcacgttggcttagaaggtcaggagaagggcaatgc 620

                                  
Query: 421 tggccctgcagggctagtacatt 443
           |||||||||||||||||||||||
Sbjct: 621 tggccctgcagggctagtacatt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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