BAC Information

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BAC

Clone NameMSMg01-360D09
Chromosome14 (Build37)
Map Location 47,815,869 - 47,908,655
singlet/doubletdoublet
Overlap geneWdhd1, Socs4
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
Downstream geneLOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360D09.T7 (MSMg01no360_d09.b1)MSMg01-360D09.TJ (MSMg01no360_d09.g1)
ACCAG469441AG469442
length749780
length of high quality
(start - end)		584 (73 - 656)429 (76 - 504)
definitionCHROMAT_FILE: MSMg01no360_d09.b1 PHD_FILE: MSMg01no360_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:54 2005CHROMAT_FILE: MSMg01no360_d09.g1 PHD_FILE: MSMg01no360_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,908,098 - 47,908,655)(47,815,869 - 47,816,297)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTTTATAATTACCCAAAGTTACGAGCTAGTGGTTGAGAACTAATAAC
CAGTATTGTTTCTTCTCTTGTTTCCATTTCTACTGATTCAAACAAGAACA
ATTTTAAGTTGTAAAGTTTTTAGAATTTAAGTAAATAATTACCACTAAGC
AATGGGAATGCCAAGTAAATATTCTTAAATGAGTTTTGCCAATTAATTTC
AGTAAGTGGTTAATTACATCATTATCAATCTATGTAGCTTTTAGAAGTAT
TTTACTCATATAATACTCTTACTTTCTTGATCACTTGAAAATAAGTAGGT
AAATTTCTACAGAGCATTCCTTGGCTACACATACTAGAATTTATAATGAA
TTTACAGAACTATTTCTAAAAGTTTTTTAGTCATTTTTAAATTCTATTTG
TGTAGCAGTGTGTTTATGCGCGTGCATGCAGGTGCCTGAGTAGGTTAGAG
GCATCAGGTCCCCTGAAACTGTAGCTATAGGCAGTTGTGAGCCTGCGGGG
TGTGTGCTAGAAACCAAACCTAGGTCCTCTGGAAGAGCAGTACATCTCTT
AGCTTCTGAGCCAGCTCTCCAGCCTCCCTTTATTTTTAAGTGAAGCAAGA
GTTAAGCTAGTAATTGAGAGTCACAGTCCTATTACTCCCAATATTTTGCA
AATGACAGCTGAATTTTGTATCTAAAAAAAATCAGTCCCTTGATATGCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAACAAAGACAACCCAGTGCCCA
CCTGGAAGTATTTACATAAAGGAATTGTAACGACGCCATATTTCTACCCC
AATTAGAGGCCCAGTAGCAGACCCAATCTAGCAACTTCTTTCTTCCAAAA
GTCCAAGGACCTTTTCCAATCCTATCATTTCTAGGGCATGTGCCAGAAAA
AGAGGGAGATAACAGAGGTACTTGGTGTCGGAGGCTGACCAGACTAGGGG
AGACAACCTAGTCAGTTGCCAAGGGCAACAGGTGAAGTGGCCTCAGAAAT
TTAGCAACACTGATTAGAAATGTCTTCAGGTGAACTTGATGAAGGTTCTA
TATTTGAAAGTCAAGCTCTGGGGGAGACTCTGGCTCGTGGTGGAAAGAGC
CACACGCTAGTTTTATGTTAATTCAACACAAGCTAGAGTCATTTGGGGCA
GAGGAACCTCAAGGGAGAAAATGTCCCATCAGATTGGCCCGCGGTGCATT
TTCTTGATTTAAGATTAATGCATGAGAGCCCATGTGGGGAGTGCTGGGCA
AGAATCTGAGTCCTGTCAGATAATAAGGCCGAGTCCTTCCTGACGTCCTT
TCTCCATTATTTGCTTTTTTTCTCACCCCCTCGGTTCCCAATTCCGGCCT
CCACCCGCTTTCTGGCCCTTGCATCCCACCTCCGTGGGCTAAAGCGGCGA
TTTAATGCGGAGTGTGCGACAAACACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_d09.b1 MSMg01no360_d09.b1 CHROMAT_FILE:
MSMg01no360_d09.b1 PHD_FILE: MSMg01no360_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:54 2005
         (584 letters)



>mm_chr14_47908098_47909081
          Length = 984

 Score = 1071 bits (554), Expect = 0.0
 Identities = 557/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacgagctagtggttgagaactaataaccagtattgtttcttctcttgtttccatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacgagctagtggttgagaactaataaccagtattgtttcttctcttgtttccatttcta 499

                                                                       
Query: 61  ctgattcaaacaagaacaattttaagttgtaaagtttttagaatttaagtaaataattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgattcaaacaagaacaattttaagttgtaaagtttttagaatttaagtaaataattac 439

                                                                       
Query: 121 cactaagcaatgggaatgccaagtaaatattcttaaatgagttttgccaattaatttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cactaagcaatgggaatgccaagtaaatattcttaaatgagttttgccaattaatttcag 379

                                                                       
Query: 181 taagtggttaattacatcattatcaatctatgtagcttttagaagtattttactcatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taagtggttaattacatcattatcaatctatgtagcttttagaagtattttactcatata 319

                                                                       
Query: 241 atactcttactttcttgatcacttgaaaataagtaggtaaatttctacagagcattcctt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atactcttacattcttgatcacttgaaaataagtaggtaaatttctacagagcattcctt 259

                                                                       
Query: 301 ggctacacatactagaatttataatgaatttacagaactatttctaaaagttttttagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggctacacatactagaatttataatgaatttacagaactatttctaaaagttttttagtc 199

                                                                       
Query: 361 atttttaaattctatttgtgtagcagtgtgtttatgcgcgtgcatgcaggtgcctgagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atttttaaattctatttgtgtagcagtgtgtttatgcgcgtgcatgcaggtgcctgagta 139

                                                                       
Query: 421 ggttagaggcatcaggtcccctgaaactgtagctataggcagttgtgagcctgcggggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ggttagaggcatcaggtcccctgaaactgtagctataggcagttgtgagcctgcggggtg 79

                                                                       
Query: 481 tgtgctagaaaccaaacctaggtcctctggaagagcagtacatctcttagcttctgagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tgtgctagaaaccaaacctaggtcctctggaagagcagtacatctcttagcttctgagcc 19

                             
Query: 541 agctctccagcctccctt 558
           ||||||||||||||||||
Sbjct: 18  agctctccagcctccctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_d09.g1 MSMg01no360_d09.g1 CHROMAT_FILE:
MSMg01no360_d09.g1 PHD_FILE: MSMg01no360_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:54 2005
         (429 letters)



>mm_chr14_47815669_47816497
          Length = 829

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaacaaagacaacccagtgcccacctggaagtatttacataaaggaattgtaacgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaacaaagacaacccagtgcccacctggaagtatttacataaaggaattgtaacgacg 260

                                                                       
Query: 61  ccatatttctaccccaattagaggcccagtagcagacccaatctagcaacttctttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatatttctaccccaattagaggcccagtagcagacccaatctagcaacttctttcttc 320

                                                                       
Query: 121 caaaagtccaaggaccttttccaatcctatcatttctagggcatgtgccagaaaaagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaagtccaaggaccttttccaatcctatcatttctagggcatgtgccagaaaaagagg 380

                                                                       
Query: 181 gagataacagaggtacttggtgtcggaggctgaccagactaggggagacaacctagtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagataacagaggtacttggtgtcggaggctgaccagactaggggagacaacctagtcag 440

                                                                       
Query: 241 ttgccaagggcaacaggtgaagtggcctcagaaatttagcaacactgattagaaatgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgccaagggcaacaggtgaagtggcctcagaaatttagcaacactgattagaaatgtct 500

                                                                       
Query: 301 tcaggtgaacttgatgaaggttctatatttgaaagtcaagctctgggggagactctggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaggtgaacttgatgaaggttctatatttgaaagtcaagctctgggggagactctggct 560

                                                                       
Query: 361 cgtggtggaaagagccacacgctagttttatgttaattcaacacaagctagagtcatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtggtggaaagagccacacgctagttttatgttaattcaacacaagctagagtcatttg 620

                    
Query: 421 gggcagagg 429
           |||||||||
Sbjct: 621 gggcagagg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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