BAC Information

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BAC

Clone NameMSMg01-360G19
Chromosome14 (Build37)
Map Location 95,594,945 - 95,595,399
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783, LOC677613
Downstream geneLOC100043784, LOC382931, 4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G19.T7 (MSMg01no360_g19.b1)MSMg01-360G19.TJ (MSMg01no360_g19.g1)
ACCAG469603AG469604
length754758
length of high quality
(start - end)
587 (45 - 631)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no360_g19.b1 PHD_FILE: MSMg01no360_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:10 2005CHROMAT_FILE: MSMg01no360_g19.g1 PHD_FILE: MSMg01no360_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATACCATATGGCTGAGAAGTACCAGAAAAAATGTT
CAACATCCTTAATCATCAGGGAACTGCAATTGAAAATATCCTGGAGATTC
CATCTTACATCAGTCAGAATGCTTAAGATCAAAAATTCAGCTGACAGGAG
AAGCTTGCAAGGATTTGGAGAAAGAGGATCACTCCTCCATTGCTCATGGG
ATTGCAAGCTTGTACAACCACTCTGAAAGTTATCCTGGAGGTTCCTCAGA
AAACTGGACATAGTACTACTGGTAGATCCAGCAATACTTCTCCTGGGCAT
ATACCCAGATTTTCCAACTGGTAATAAGAACACATGCTCCACTATGTTCA
TTGCAGCCTTATTTATAATAGCCAGTTGATGAAAAGAACCCAGATGTCCC
TCAACAGAAGAATGGATACACAAAACATGGTACATTTACATAATGAGTAC
TACTCAGCTATTAAAAATGAATTTATGTAATTCTTGGACAAATGGATATA
TTTGGAGGATATCATCCTCAGTGAGGTAACCCAATCACAAAGAAGTCATT
AGATATGCACTGACTAATAAGTGGATATTAGCCCAGAAACATAGAACACC
TAAGATACAATCTGCAAAACACAAGAAAATCAGGAAGAGGGAAGATCAAT
GGGGTGGGAACTTTGTTTCCTCCTTAAACAGGGAAAAAAAGTACCCCTGA
AAGG
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTGCTTGTGCCTCAGATAATTCCAG
ATGTAGTGAAGTTGACGACCAAAACTAGCCATTGCACCCACCCACCCACC
CTGTTCCTTTCATTTCACACATATATACACCCACCCAACCCCTACCCCCT
CACAGCACTGCACAGGCATATATAAATTAATATTCTATTTTTATATTTGC
ACATAACATTATTTCTGCATACCAAATAATTGTTTTTATATTTACTGAAT
AATATTAGTCCTGGGGGACAAATTTCTTAAACTGCATTACTTTAGTCACC
TTTATATTATATTAAGATTTCAACCAATACACTTACCTAGCTTCACAGAT
AATCAATCATAATACTTGAGACTCTAAAGAAAAAAACACTTACTAATTAA
ACTCACCCATTTTCCATAACTATAATTCTCCTACACCTGTGTGTGGAATA
TCCATTTGGAAAGTTACTGCTGCTGCCATTCTAATTTCTAGTTTCCATAA
AACAATTTTTTCATCTGAATCCACATAGTGAGGGGTAATAGTTCACATTA
ACTTATTTCAAAAATTATATTTGCATTCCCGGAAAAATAATCCACCCCTT
TTATGACACCCTTATTACTATCTCAATGAAAAATTATTAATTATTGCCCC
CTTCTTTTTTTTCTCTTGTAAACCAACTTCTTAAAAAAATGGGCCTCCTC
CACCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g19.g1 MSMg01no360_g19.g1 CHROMAT_FILE:
MSMg01no360_g19.g1 PHD_FILE: MSMg01no360_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:10 2005
         (460 letters)



>mm_chr14_95594570_95595428
          Length = 859

 Score =  839 bits (434), Expect = 0.0
 Identities = 452/460 (98%), Gaps = 5/460 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgcttgtgcctcagataattccagatgtagtgaagttgacgaccaaaactagccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agctgcttgtgcctcagataattccagatgtagtgaagttgacgaccaaaactagccatt 771

                                                                       
Query: 61  gcacccacccacccaccctgttcctttcatttcacacatatatacacccacccaacccct 120
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 g----cacccacccaccctgttcctttcatttcacacatatatacacccacccaacccct 715

                                                                       
Query: 121 accccctcacagcactgcacaggcatatataaattaatattctatttttatatttgcaca 180
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 714 accccctcacagcaccgcacaggcatatataagttaatattctatttttatatttgcaca 655

                                                                       
Query: 181 taacattatttctgcataccaaataattgtttttatatttactgaataatattagtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 taacattatttctgcataccaaataattgtttttatatttactgaataatattagtcctg 595

                                                                       
Query: 241 ggggacaaatttcttaaactgcattactttagtcacctttatattatattaagatttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggggacaaatttcttaaactgcattactttagtcacctttatattatattaagatttcaa 535

                                                                       
Query: 301 ccaatacacttacctagcttcacagataatcaatcataatacttgagactctaaagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 534 ccaatacacttacctagcttcacagataatcaatcataatacttga-tctctaaagaaaa 476

                                                                       
Query: 361 aaacacttactaattaaactcacccattttccataactataattctcctacacctgtgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaacacttactaattaaactcacccattttccataactataattctcctacacctgtgtg 416

                                                   
Query: 421 tggaatatccatttggaaagttactgctgctgccattcta 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tggaatatccatttggaaagttactgctgctgccattcta 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space:   382050
Effective search space used:   382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)