BAC Information

Click to search

BAC

Clone NameMSMg01-360K10
Chromosome14 (Build37)
Map Location 102,191,967 - 102,192,215
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360K10.T7 (MSMg01no360_k10.b1)MSMg01-360K10.TJ (MSMg01no360_k10.g1)
ACCAG469775AG469776
length776795
length of high quality
(start - end)
249 (65 - 313)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no360_k10.b1 PHD_FILE: MSMg01no360_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:27 2005CHROMAT_FILE: MSMg01no360_k10.g1 PHD_FILE: MSMg01no360_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCGGAATT
CCTAATGTTCAGCTGCTGCGGGGTTTTCCTTACGTGGGTCCACCCTCACT
TTGAGTTTGTTTCTGATCTGTTTGTGGGGGAATATCTGGAATTGGTTGCA
TAGGTTATCTGAGCAAATCCTTGGGTGGGCTGCTCAAAATAATTCCCAAA
GGAGTACATCATTCTCTCTAAGCCAAATGCTATGCCTTTACGTCTTTACT
TACCTGACTGAGCTCCTAGTGGGAAGAGTTATTTGTTTTTTATTGTTAAT
CTTTAGCCCAGTGTTTTTAGCAGGAACAGACACCAAGCTCATGCATAGTT
GTCTGGTTCTACTACAGGTGATTGCTATAGGTGGGGAGGACCCTCTCCTT
CTTCCTGGCCCCGAGGCTATCATGGTCTGGTCAGGCTCTTATGAAATCAA
CAAAGTCAATTTCTCTCTCCCCCTCTCTCTCTCTCTCTTCCTCCCTCCCT
CCCTCCCTCCTTTCTTCTTTCTACTCCCTCTTTCTCTCCCTGATTAAAAA
ACTCATCTTCCGTGTTCTGCCTCTTTAATTTCTATTATATCATGTATTAT
TGCGTCCTTCCCCCTACCCTTTTACACCTATCATCTCCTCGCCAATTTCT
ATCTTTTTTTGTTATTAAATTTCTTATTTTCATATTCCTCATTTTATTTA
TCAACTACTATTTATATTTACATTTTATTTTATCACTGTTCGTCTCTTTA
TCTATAATTTCCTTTACTTATATTTN
NCGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAAGGATGTTGTTTTCTTTCTCC
TGAAAGCAATGCATTTATGGAAGGAAGTCTTCTACGTGTTCAACACTGCG
TAGGCAGAAGGGATGCCAGGTGCTAATAATGGTATTCAGCCTAAAAAAAA
TCTGTGTTTGTAATTTAGAAATAGGCTCATCTCTCAGAGACACTTGCTTT
AGATCCATTTATTGGGAAATTATTATAATGACCTGATTTGCTAAAATGAG
GTCATTTACTGGAAGTTGTCTTTGTATAGTATGCAGCACTGTGATTCTTG
CACCCAATACTATATGTTGGAATCAACACACATGGGTGCCTCACTGCCCA
CATTCTGCAGAGATGCCCACAGACAAGGACGTATATTTAAGTACAGATTT
TTATTAATTTCCCATGTTCAGCCCCACACTCAGCAATTCCTCTAAAAAAA
TCTCCAGGATCTGCACACTGCAGTGTAGATTTTCTACGACAGTTATTCTG
TCCTCCTAATTAGAAACGATATACCCTACCTGTTATTCTGATTGCTCTGG
TGTGGACGATAAACGCATGTCCCACTTCTGTTCTTTGCCTTTCCTTTCCC
ACGTATCCATATATCTCCCATATTTTGCCACTCTTTTCCCCCTATCTTTC
CATTCTTTCTCCTATACTTCTCTTTTTCTTACTTTAACATTTACTTTCTC
TCTCCTTTTTTTATACATTTTCATTCCTTCACCATTATATCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_k10.b1 MSMg01no360_k10.b1 CHROMAT_FILE:
MSMg01no360_k10.b1 PHD_FILE: MSMg01no360_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:27 2005
         (249 letters)



>mm_chr14_102191767_102192415
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgcggggttttccttacgtgggtccaccctcactttgagtttgtttctgatctgtttg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgcggggtttttcttacgtgggtccaccctcactttgagtttgtttctgatctgtttg 260

                                                                       
Query: 61  tgggggaatatctggaattggttgcataggttatctgagcaaatccttgggtgggctgct 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tgggggaatatctggaattggttgcataggttatctgagctaatccttgggtgggctgct 320

                                                                       
Query: 121 caaaataattcccaaaggagtacatcattctctctaagccaaatgctatgcctttacgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaataattcccaaaggagtacatcattctctctaagccaaatgctatgcctttacgtc 380

                                                                       
Query: 181 tttacttacctgactgagctcctagtgggaagagttatttgttttttattgttaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttacttacctgactgagctcctagtgggaagagttatttgttttttattgttaatcttt 440

                    
Query: 241 agcccagtg 249
           |||||||||
Sbjct: 441 agcccagtg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)