BAC Information

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BAC

Clone NameMSMg01-360L13
Chromosome14 (Build37)
Map Location 109,409,462 - 109,409,946
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L13.T7 (MSMg01no360_l13.b1)MSMg01-360L13.TJ (MSMg01no360_l13.g1)
ACCAG469829AG469830
length1,347755
length of high quality
(start - end)		---486 (79 - 564)
definitionCHROMAT_FILE: MSMg01no360_l13.b1 PHD_FILE: MSMg01no360_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:33 2005CHROMAT_FILE: MSMg01no360_l13.g1 PHD_FILE: MSMg01no360_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTACTCGTGTCTGTTAGCTTCTNNTNTATTATTGCACTTTAGATTCACC
TGATATATATTAGCATAACTACTATCTAATCACATATCCACTCAATCATA
CGATCAAGACACGATACATGCAACTAGGCATGACTACGATAGGTATCTAT
GTGTTGGCGTGCGAGCGGGTGTCGTGCCCGAGTATTAGCGCCGGGAGTAN
TTGATATATCACGAGAGCGAATACCAACGTCACATTCCTCATATATACTC
TGTACACAGGGAGTGATCTCCACTAGCAACATGACCACGGCGACAATGAG
ACACTAGCTTGGCTGCGCCGCGCGCCTCCGCCCGCGCTCGCTANGCGGTA
TTGTGGCCACGCCATGGCACGCGGAGCGATGAGACTCGCTACAGATCTCT
CTTTGCTCTCGTGCGGCATGGCGCTGTGTAGTGGTAGGTGGCGGCACCGG
CAAAATCACTCGGCGTATTTCTGAGCGGCATACGTGATAGTGGTGCGTCT
ATCGCGTGGCGCTGTTGCGGTGCGTCGCTTGTGGCTGTTTCTGATGCTCG
TTCTAATGTACGNTTCTGTCATATAGCTAGACTATACTTGAGCGNGGCGA
TATGTNAGCATCGTACTCATACGCGAGACTCGTGTATAACTATATTTGTT
GCGAGTGTACTGCTAACACGATACAGCGAGCACAGGCGCATGCATCATCG
ACTTATATTATCATACTCGACACAGCTATTACGCTCCTATGTGAGAAAGG
ATATGAGATGAATCATTACAGCTGTATGCTGTGGAGCTGCGAGACATATG
GATCAACGAGTTCATAGCGCCAACGTGTCGACAGTGATCTATACGTAGAG
AGAGAGCGTATATNACGAGCTATATATATATATATTTACATCACGAAGAA
GTATGATATATCTCTATCTCTAGCTGCANATCATAGATCGCTGACAATAC
AATATTATTCTCTTCACTCGCTTCGGCATATGTATGAGCGAGACGTATAC
ATATGCATATATCTACATACAGCGCGTGACATACACAGTGAGTACGTCTG
CGATAGCACATAGATCATATCATCGTAGACAGATGACTTGCGACCATCAA
GCGATGTACATAAGCTATGTTGACAATAGACGCATGCAACAGTCTGTATG
CTGCTTGCCGATGGGCTGAGCGAGTGTGTACTGCGCGACTACTGCGCAGC
AATACTGGTATGGATGCCTGGTCGTCAGAATAGTGCTCGCCNTCTATCAC
TGTCACGCATACGCGTGATGCTATGACGCTTAGACGAAGAATAGGTGACA
ACATNTGTTGGTCGTATGCAGATCGTANCTGGAGTGTATATACTATG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCTTTTAATAAACTCCTGGA
TGATGCTGTTAGCCGGAGGGCTGTAGTTTTGAAAAATTTTGTTGTAAGAT
ATTGATTAAAAATCATGAAATGTTTTCCATGTTTCCCAGCTTTGAAAAAG
TAGTGGGGATAGAGAATCCGCTTAGCAGTAAAAGAGAGCATGTAAGACCA
TATTTAGATATTTTCCCACATGCAGATATTTTTTCTTTTTTTATTTCTAA
AACTGATATGTTTCTTTAAGAAACTCTTATTTGTAATGACATAAATCGAG
GGTGCTAGGTCAGTGGTTAAAAGCACTATTATTCTTGCATAGGACCTGAG
GGAATTTCTCAACACTCACTTTGCACAGCTCATACTGCCCTTAACAACTA
GTCCAGAACATAGAGCTTGAGTCCTTATTACCAGTAGGAACTACTTCTGG
ATATATGCCCAGGAGAGGTATTGCTGGATCTTCTGGTAGTACTATGTCCA
ATTTTCTGAGGAACTGCCAGACTGAATTCCAGAATGGTTGTACAAGCTGG
CAATGCCACCAGCAATGGAGTGTTACTCTTTCTCCACATTATACCAGCAT
CTGCTGTCACCTGAATTTTTGATCTTAGCCATCCTGAATGGGGTGAAGGG
GGAATCTCCCGGGTGTTTTTGATTCACATTTTCCTGAAAGTTTTGTGCGG
CCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l13.g1 MSMg01no360_l13.g1 CHROMAT_FILE:
MSMg01no360_l13.g1 PHD_FILE: MSMg01no360_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:33 2005
         (486 letters)



>mm_chr14_109409262_109410149
          Length = 888

 Score =  862 bits (446), Expect = 0.0
 Identities = 476/492 (96%), Gaps = 13/492 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttttaataaactcctggatgatgctgttagccggagggctgtagttttgaaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgcttttaataaactcctggatgatgctgttagccggagggctgtagttttgaaaaatt 260

                                                                       
Query: 61  ttgttgtaagatattgattaaaaatcatgaaatgttttccatgtttcccagctttgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgtaagatattgattaaaaatcatgaaatgttttccatgtttcccagctttgaaaa 320

                                                                       
Query: 121 agtagtggggatagagaatccgcttagcagtaaaagaga----gcatgtaagaccatatt 176
           |||||||||||||||||||||| |||||||||||||| |    |||||||||||||||||
Sbjct: 321 agtagtggggatagagaatccgtttagcagtaaaagaaaaagggcatgtaagaccatatt 380

                                                                       
Query: 177 tagatattttcccacatgcagatattttttctttttttatttctaaaactgatat--gtt 234
           ||||||||||||||||||||||||||    |||||||||||||||||||||||||  |||
Sbjct: 381 tagatattttcccacatgcagatatt----ctttttttatttctaaaactgatataagtt 436

                                                                       
Query: 235 tctttaagaaactcttatttgtaatgacataaatcgagggtgctaggtcagtggttaaaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctttaagaaactcttatttgtaatgacataaatcgagggtgctaggtcagtggttaaaa 496

                                                                       
Query: 295 gcactattattcttgcataggacctgagggaatttctcaacactcactttgcacagctca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcactattattcttgcataggacctgagggaatttctcaacactcactttgcacagctca 556

                                                                       
Query: 355 tactgcccttaacaactagtccagaacatagagcttgagtccttattaccagtaggaact 414
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tactgcccttaac---tagtccagaacatagagcttgagtccttattaccagtaggaact 613

                                                                       
Query: 415 acttctggatatatgcccaggagaggtattgctggatcttctggtagtactatgtccaat 474
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcttctggatatatgcccaggagaggtattgctggatcttctggtagtactatgtccaat 673

                       
Query: 475 tttctgaggaac 486
           ||||||||||||
Sbjct: 674 tttctgaggaac 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 888
Length adjustment: 10
Effective length of query: 476
Effective length of database: 878
Effective search space:   417928
Effective search space used:   417928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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