Query= MSMg01no360_m01.b1 MSMg01no360_m01.b1 CHROMAT_FILE:
MSMg01no360_m01.b1 PHD_FILE: MSMg01no360_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:35 2005
(411 letters)
>mm_chr14_72827293_72828103
Length = 811
Score = 772 bits (399), Expect = 0.0
Identities = 405/407 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaaagttcatggccagtcttggaaagataacaaggctgagccctataagaaaga 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaattcaaaagttcaaggccagtcttggaaagataacaaggctgagccctataagaaaga 552
Query: 65 aagtaaacaaacaatggtttttgattgtagaaaaagacatggcaagtggaagaggcgctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagtaaacaaacaatggtttttgattgtagaaaaagacatggcaagtggaagaggcgctg 492
Query: 125 gatgagctgaacgaggagttcttttggctcagcactcaagccttggagctccagaaagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gatgagctgaacgaggagttcttttggctcagcactcaagccttggagctccagaaagag 432
Query: 185 gacggtaaactggaccaagtcctgctgggggaagagaacacctctatggtaagcccagcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gacggtaaactggaccaagtcctgctgggggaagagaacacctctatggtaagcccagcc 372
Query: 245 aatgaacacctcaactcctcatgtccgcagggggagcttatagtatcagagccccttgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatgaacacctcaactcctcatgtccgcagggggagcttatagtatcagagccccttgca 312
Query: 305 cagaggttggttatgaccagaacatctggtagccatggctacgtgctgcattctgtttgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagaggttggttatgaccagaacatctggtagccatggctacgtgctgcattctgtttgg 252
Query: 365 cacatgaaaggctgagcaaggaagactgagagctgaggatacagacg 411
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 251 cacatgaaaggctgagcaaggaagaccgagagctgaggatacagacg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_m01.g1 MSMg01no360_m01.g1 CHROMAT_FILE:
MSMg01no360_m01.g1 PHD_FILE: MSMg01no360_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:35 2005
(452 letters)
>mm_chr14_72657384_72658234
Length = 851
Score = 781 bits (404), Expect = 0.0
Identities = 440/452 (97%), Gaps = 1/452 (0%)
Strand = Plus / Plus
Query: 1 ctactgtgggctgaataggctctgtcccctctgaaactcgccttggaattccattgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgtgggctgaataggctctgtcccctctgaaactcgccttggaattccattgctct 260
Query: 61 gaggtgctgttggaggggtgatattggggtttttaaagggcaaaaattcaattaagaatg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtgctattggaggggtgatattggggtttttaaagggcaaaaattcaattaagaatg 320
Query: 121 attaatatctttctcctttcttctaagggtaagttactataaaggatttagcataaaggt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 attaatatctttctcctttcttctaagggtgagttactataaaggatttagcataaaggt 380
Query: 181 gggtaccctatgatctgtcatttccatatattcctacttagcattctgctttcccaccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtaccctatgatctgtcatttccatatattcctacttagcattctgctttcccaccac 440
Query: 241 atcaaggcatgattaagccctcagcaaattcatcccaatgttggacttcatacctctggg 300
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 atcaaggcatgag-aagccctcagcaaattcatcccaatgttggacttcaaacctctggg 499
Query: 301 atcatgagcttaataagtttcttttccttaagaacgttccatcttcatggatgatctgtt 360
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct: 500 atcatgagcttaataagtttcttttccttaagaatgttccatcttcacggatgatctgat 559
Query: 361 acagtaactgaagatgagctaaggcaccagaagatgaactcaagctcaccagtttacaga 420
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 acagtaactgaagatgaggtaaggtaccagaagatgaactcaagctcaccagtttacaga 619
Query: 421 ggagctgctagcgaaattgtggtacttctggc 452
||||||||||| ||| ||||||||||||||||
Sbjct: 620 ggagctgctagtgaacttgtggtacttctggc 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 851
Length adjustment: 10
Effective length of query: 442
Effective length of database: 841
Effective search space: 371722
Effective search space used: 371722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
