BAC Information

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BAC

Clone NameMSMg01-362H18
Chromosome14 (Build37)
Map Location 74,470,678 - 74,470,980
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
Downstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H18.T7 (MSMg01no362_h18.b1)MSMg01-362H18.TJ (MSMg01no362_h18.g1)
ACCAG471159AG471160
length761749
length of high quality
(start - end)		480 (52 - 531)478 (83 - 560)
definitionCHROMAT_FILE: MSMg01no362_h18.b1 PHD_FILE: MSMg01no362_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:52 2005CHROMAT_FILE: MSMg01no362_h18.g1 PHD_FILE: MSMg01no362_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCTTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTATATTAAGATGAATCAGAATAGAAAAGGTAGGACACA
CAAGTACATGATTAAGAGCAGACAGCCTAGAAATAAACTCACACAAATAT
ACAAGAGAGACCTGGTCTTTGAGAAAGGGCCAAGAAGGAGGGGAAGGTTT
GTAATTTCAATAGATCATACTGAGTAAATAGCCAGCTATGTGTAGAAAGT
TAAAAATAGACACAAACCTTACAACATACACAACAATTAACTAAAAAGGG
ATCAGATGCCTATTTAAAACCCAAACTAGAAAACATCAAGAAGATAACAC
AGCAAACTTAAGTGATAGCAGAAATGATGTTGATTCTTACATGATACCCG
CGGGGATACAACAGTTTGCTAAAAGTAGATGAGCTAAATCGTTAACATAA
TGGAAGGAAATACCATAGACAAAGAATTTGGAAACCAGTCTATCTGATAA
AAGAATTGCATCCAAAATATAAAATTAGATATTGAAAACGTTTAAGTTTC
ACTGACCATTGTAATGAGATTGCAATTATAGAAGTTCTGATATAAAATAG
AACTAGATAGGGGGTTTGCTTTTTTTGGGAAGACAAATGTACCAGTGTTA
TTCTTGGAAACAGAATGACTGTGGGGTAAATAACCTGGGGTGTAACAAAA
AGAGTTTTTCCAAAAAACTTCTTTAACAGTTTCTTATTATAGGCTTTCCC
GGGGAAAAATT

NNNNNNCCGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATGTGCAACTGCTTTG
CTGTGACCAGAACACACTGTTTCCTTGCCATAAATCACTTCTGGCTCTTA
AAATGTCCCGTCCCTTCATCTAAAACAATCCCTGAGCCTCAAGTGAAGAG
TGTGTGATAGAGATGGACCATTTAGGGATCACTGTTCTGCAGTCATATTC
TATTCATCTTGACCAGTTGTGGGTCTCTGTGTTAATTACCATTTACAACA
AATAACAACATCAACAACAACAACCACCACCAAAGATTTTGAGGGTTGAG
GGATGTACTGATCTATGGGTATAGTAAGAAATCATTAGGAGTCAGTTTAA
TACTGTCTCCATTTGGAAGATTAATCTAGCGTTCTCCCCTACCCTCACTA
AATGTAGTACTATATGCTTTGAATAGGGCAATAAGATGAAGGAATGCAAT
AGGAAAAGAAGTAGTCAAAGCATCCTTAGGTGCAGATGATCTGATTCTCT
ATATAAAAGACCCCCAAGACTCTACCAGAAATCTCCTGAAATTAATAGAA
TCATGTAGAAAATTANCAGGACTTAAAAATAAATGTAGTAAATCCGGAGC
CAAACCCCAGTGAACAAACCTTTGAAAAAAAAAAAGGGGAAAAAATTCCT
TTCGCTTAAAAAATCTGGAAAAAATTGTAAAAAAACCTTTTCCATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h18.b1 MSMg01no362_h18.b1 CHROMAT_FILE:
MSMg01no362_h18.b1 PHD_FILE: MSMg01no362_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:52 2005
         (480 letters)



>mm_chr14_74470101_74470980
          Length = 880

 Score =  501 bits (259), Expect = e-146
 Identities = 287/303 (94%), Gaps = 11/303 (3%)
 Strand = Plus / Minus

                                                                       
Query: 189 gtgtagaaagttaaaaatagacacaaaccttacaacatacacaacaattaactaaaaagg 248
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 880 gtgtagaaagttaaaaatagacacaaaccttacaacatacacaacaattaactacaaagg 821

                                                                       
Query: 249 gatcagatgcctatttaaaacccaaactagaaaacatcaagaagataacacagcaaactt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gatcagatgcctatttaaaacccaaactagaaaacatcaagaagataacacagcaaactt 761

                                                                       
Query: 309 aagtgatagcagaaatgatgttgattcttacatgatacccgcggggatacaacagtttgc 368
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 760 aagtgatagcaggaatgatgttgattcgtacatgatacccgcggggatacaacagtttgc 701

                                                                       
Query: 369 taaaagtag-----------atgagctaaatcgttaacataatggaaggaaataccatag 417
           |||||||||           |||||||||||| |||||||||||||||||||||||||||
Sbjct: 700 taaaagtagatgttcgcactatgagctaaatcattaacataatggaaggaaataccatag 641

                                                                       
Query: 418 acaaagaatttggaaaccagtctatctgataaaagaattgcatccaaaatataaaattag 477
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 acaaagaatttgaaaaccagtctatctgataaaagaattgcatccaaaatataaaattag 581

              
Query: 478 ata 480
           |||
Sbjct: 580 ata 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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