BAC Information

Click to search

BAC

Clone NameMSMg01-362N02
Chromosome14 (Build37)
Map Location 99,202,659 - 99,203,123
singlet/doubletsinglet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362N02.T7 (MSMg01no362_n02.b1)MSMg01-362N02.TJ (MSMg01no362_n02.g1)
ACCAG471413AG471414
length763748
length of high quality
(start - end)
493 (48 - 540)465 (76 - 540)
definitionCHROMAT_FILE: MSMg01no362_n02.b1 PHD_FILE: MSMg01no362_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:19 2005CHROMAT_FILE: MSMg01no362_n02.g1 PHD_FILE: MSMg01no362_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCCGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAGAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCTATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGAATACTACTCAGCTATTAAAAAGAATGAATTTATGATATTCCTAGGCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCCA
AGAAACTCACACAATATGTACCCACCTGATAAGTGGATATTTAGCCCCAA
ACCTTAGGATACCCCAAGTTATAAGAAACAAATTTTGCTACACTCATGAA
ATCTCCACCAAATATGTACCACCTAACGTGGTGGGATCCCTAATGCCTCC
TTCTTAAAAAATT
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGGTGTGAAGACCTTGTTACA
TCGTTCTAAGGATGAAGAATAGCCACCCCTAAATAATTTTATATTTAATA
ACGCTTAACACTTACTGCTAAGGTGAAGTCAGAATTTACAAACTTCTCAC
AAGTAGTAATGCTGATCTAATTTTCTTGCCTTTAATGTTTATTGGTCTTA
ACTTCAAACGTTTAAGGAAGGTTTTTAAGTCTAATCACTTCTGGAACATC
CAATTTATTTTAGAGATACCAGAGTTGGTATCTGTTTACTTCTTAACCCC
TAAGTACAAAGGAATTTAAATGTTTAAAAATGTAGATAGTCCATGGAGAA
ATATAGTTTTCCATGTCCAATAAGCTCGAGAAAAGATCAACCTTGCTTAC
CCTGCCCTGGGAGTCAATACCTATTGCTCAGATATGGGCCAAGTGCTGAG
CTTTAATAAAGATCAAAAAGCGCAGAGGTTGTGAGGCTAAACCACTAGAA
ACATGGAGATCTGCTGAAGGTCTACAGATTACCAGGGAAGTATGAAGGAT
AACCGGTGGTGCAGGTCCTGGGAGGAAAATATAAAGCTTGACACAGCGGT
TTGCCTGCTTTATACACTATATAAAATCAACTTCCGCCTTATTTCAGTTT
TTAAAAGGAAGTCCCATTTTAACCCCAGGATCAGTATTACTCGTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_n02.g1 MSMg01no362_n02.g1 CHROMAT_FILE:
MSMg01no362_n02.g1 PHD_FILE: MSMg01no362_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:19 2005
         (465 letters)



>mm_chr14_99202459_99203323
          Length = 865

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaggtgtgaagaccttgttacatcgttctaaggatgaagaatagccacccctaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaggtgtgaagaccttgttacatcgttctaaggatgaagaatagccacccctaaata 260

                                                                       
Query: 61  attttatatttaataacgcttaacacttactgctaaggtgaagtcagaatttacaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttatatttaataacgcttaacacttactgctaaggtgaagtcagaatttacaaactt 320

                                                                       
Query: 121 ctcacaagtagtaatgctgatctaattttcttgcctttaatgtttattggtcttaacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcacaagtagtaatgctgatctaattttcttgcctttaatgtttattggtcttaacttc 380

                                                                       
Query: 181 aaacgtttaaggaaggtttttaagtctaatcacttctggaacatccaatttattttagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacgtttaaggaaggtttttaagtctaatcacttctggaacatccaatttattttagag 440

                                                                       
Query: 241 ataccagagttggtatctgtttacttcttaacccctaagtacaaaggaatttaaatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataccagagttggtatctgtttacttcttaacccctaagtacaaaggaatttaaatgttt 500

                                                                       
Query: 301 aaaaatgtagatagtccatggagaaatatagttttccatgtccaataagctcgagaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaatgtagatagtccatggagaaatatagttttccatgtccaataagctcgagaaaag 560

                                                                       
Query: 361 atcaaccttgcttaccctgccctgggagtcaatacctattgctcagatatgggccaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaaccttgcttaccctgccctgggagtcaatacctattgctcagatatgggccaagtg 620

                                                        
Query: 421 ctgagctttaataaagatcaaaaagcgcagaggttgtgaggctaa 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagctttaataaagatcaaaaagcgcagaggttgtgaggctaa 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)