BAC Information

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BAC

Clone NameMSMg01-363P03
Chromosome14 (Build37)
Map Location 64,801,009 - 64,801,503
singlet/doubletsinglet
Overlap geneMsra
Upstream geneNeil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P03.T7 (MSMg01no363_p03.b1)MSMg01-363P03.TJ (MSMg01no363_p03.g1)
ACCAG472260AG472261
length1,457769
length of high quality
(start - end)
---496 (79 - 574)
definitionCHROMAT_FILE: MSMg01no363_p03.b1 PHD_FILE: MSMg01no363_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:50 2005CHROMAT_FILE: MSMg01no363_p03.g1 PHD_FILE: MSMg01no363_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAGAGTAGCAGTTCGCAACGCTCTAGNAGCAGCACNCGTGTATCTCTC
GCCGAGAGGACACGTTGCTGTGGAGAGTCTACGTGCGAGTGTACTGTGCT
ATACCGACGTGTAGCACAGACTCGAGTCGCTAATACGACGCGTCTGAGTT
AGCGACGTAGCGTCCTGCGCGGTTCTTCGCACGCGTATGCAGGACATACT
ACAGTATCNTGGCGCGATGCATCGGCGATGTATCATGANAGCTCTCACCG
TAGCTATATAGCACGTACGGTCCGGCGACTTGCGTAGCGTTGATTTTATG
CTTGTACGCCTATTACTAGGTATACACGACACGTCTATGCTCCGNCACTC
TTCGCGATGATCCTGCTGCACATACTCTATCTTACGATACGTCTACATGG
TACTCTATCATCGTATACGCGACGCGCCATTAGTACTCTCTACCTGTCCG
CTCGCGCGACTTCGCACGCTCTTGTATGCGATACTCAGTAGTAATCAGAA
CTGCCGACATTCTCGTGTGATAAACCGCATTTCACACCATTATATACCAG
TCATTTCTTATGCAGTACGGCGTGTCTGTGGATCGCCGACCGCTCGCATT
ATGAGTCATTTGTCGGCATATCATTTCCCGGCCTGTATCCGTGCACCGAC
ACTCCTTTACACGTATTCACGCCTTGTCTACCACGAATGTGGTGCGCCAA
GTGTATCGCCGAGGACTATGTTCAGTGTTTAGCNGCGTCTGTCTCTACCC
TCTCTCACTCGACGTCATCTATCGACGTCGCCCGGTATGTGAGATGTATA
TCTGCGATGTAGTGACCGCACTTACGCATTTTGCTTTTCGACGCGGACTC
GCGTGTATGTGTTCAGTCTATGTATCGATTCATTACTTCGTCATATCGNC
CACGATTGTCTGATCGCCTGCCGTATCGACACATGCATGTATGTACATGG
CTCTGANTACGTAGTCGCGTCTTGACACACGCACGTCTATAATCGACTCG
ATATGTGCATCGTGTCTCGTCGTTCTACATGTNATCGTCTACGCACCCGC
CACACCACGCTACTAGAGAGTCATATATTANGTCACTACTGTCNGTCGAG
TGATACGCGCTAGTTAACTCTGAGATAGAGTGTCTACCATGCATCGATAT
GATATTTATAGTAATCTTACACCGCCACGTGTACACGATTGCGGACGCAG
TCACAGCGATTGTATGTTTAGTGTGAGATATTCGCCACATCAATATAGCG
ATACGCGTCAGCCATAGTGTATGCTGTGATGTAGTAGTGCCGATGCCGCC
GCGTCANTGTTATTCCTGCGTTCGTATATGTACACGACGCATTGGTCATT
ATACTATACTCGCCCGACCCACATCGCACGATCTAAATATTGTGTAGTAT
GACGCGTGTTTGTGTGCGCACGCAGTACACTACCGCGACAGTATTGTTCA
CTTTTCG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACCCCACTCTATGTGCCC
TGAATCTGGGTGTTTATTTTGTGCTACACAGTGGGATTTCACAAACAGTG
TGGGCTCCACTAACTCAAAGTCCAACTGCGTGGAAACTCAACTTGAGACT
CAGTAAGACTTCGGTGAGCCGACTTCTCTGCAGAGTGGGAGGTGAGACCT
CATGCATGCATGCAAGATCGTGTTCTTCATGGCTTCAAAGCAAAAGAATA
CGATGTATGTAAAGACTGAAGCTAGCTAAAGAAAGATACATCAAACAAGG
TGGAGTGTCCCTACACATTCACCACATCTACAAACGCTAACCCACAGATA
GCAGCTGGGACAGGGGGTGGCCGCAACAAGGTGCAATATGGCATCATCCT
GCACTGAGAAGTGCATTCTGGGACAGGCTAAGACAGTGTAAAATCAATGA
GAACTCACCGTGGCTCTCTTCCTTGTGCTTTGGGATATTTTTCTCTACAC
CAATGGTCCTGTTTCCCCTTTCAGAATAAGGCTGTTTGCTTCTTGACAGC
ATTTTGTTCCGNTGTTTAATCTTTGTGGTTTTGAGATACAAAATTTCCTA
CACATTAGATGAAAAACTATTTCTTTTGAGTAATTGGTCTGTGTAGGGTT
CAAAAAATTTTTTTGAAGTGGAAGGCTCTTGATGAACTTAACATCTCCAA
ACGCACAAAGTGAAAGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p03.g1 MSMg01no363_p03.g1 CHROMAT_FILE:
MSMg01no363_p03.g1 PHD_FILE: MSMg01no363_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:50 2005
         (496 letters)



>mm_chr14_64800809_64801704
          Length = 896

 Score =  888 bits (459), Expect = 0.0
 Identities = 486/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaccccactctatgtgccctgaatctgggtgtttattttgtgctacacagtgggatt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaccccactctatgtgccctgagtctgggtgtttattttgtgctacacagtgggatt 260

                                                                       
Query: 61  tcacaaacagtgtgggctccactaactcaaagtccaactgcgtggaaactcaacttgaga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaaacagtgtgggttccactaactcaaagtccaactgcgtggaaactcaacttgaga 320

                                                                       
Query: 121 ctcagtaagacttcggtgagccgacttctctgcagagtgggaggtgagacctcatgcatg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagcaagacttcggtgagccgacttctctgcagagtgggaggtgagacctcatgcatg 380

                                                                       
Query: 181 catgcaagatcgtgttcttcatggcttcaaagcaaaagaatacgatgtatgtaaagactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgcaagatcgtgttcttcatggcttcaaagcaaaagaatacgatgtatgtaaagactg 440

                                                                       
Query: 241 aagctagctaaagaaagatacatcaaacaaggtggagtgtccctacacattcaccacatc 300
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| 
Sbjct: 441 gagctagctaaagaaagatacatcaaacaaggcggagtgtccctacacattcaccgcata 500

                                                                       
Query: 301 tacaaacgctaacccacagatagcagctgggacagggggtggccgcaacaaggtgcaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaaacgctaacccacagatagcagctgggacagggggtggccgcaacaaggtgcaata 560

                                                                       
Query: 361 tggcatcatcctgcactgagaagtgcattctgggacaggctaagacagtgtaaaatcaat 420
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcagcatcttgcactgagaagtgcattctgggacaggctaagacagtgtaaaatcaat 620

                                                                       
Query: 421 gagaactcaccgtggctctcttccttgtgctttgggatatttttctctacaccaatggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaactcaccgtggctctcttccttgtgctttgggatatttttctctacaccaatggtc 680

                          
Query: 481 ctgtttcccctttca 495
           |||||||||||||||
Sbjct: 681 ctgtttcccctttca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)