BAC Information

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BAC

Clone NameMSMg01-365B24
Chromosome14 (Build37)
Map Location 29,978,140 - 30,137,321
singlet/doubletdoublet
Overlap geneCacna2d3, Ppia-ps15
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365B24.T7 (MSMg01no365_b24.b1)MSMg01-365B24.TJ (MSMg01no365_b24.g1)
ACCAG473157AG473158
length774741
length of high quality
(start - end)		430 (40 - 469)337 (140 - 476)
definitionCHROMAT_FILE: MSMg01no365_b24.b1 PHD_FILE: MSMg01no365_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:32 2005CHROMAT_FILE: MSMg01no365_b24.g1 PHD_FILE: MSMg01no365_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,978,140 - 29,978,565)(30,136,985 - 30,137,321)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAATTCTGGTGTTTGCTGTTTTGCCAATTAATACATGAGATCTTATTAG
ATTAAACATAATTAATGTTGTTAACATTCATTCATTTATTTGGTCTTCAT
CGGGAAAGCAAATTGAATGGAGCAGCTACAGCAGACACTGAATATTTAAT
CAGACCGGTAGCAAAAAGCCAGGAGGACGAGTCATGAAAAGAGCTTTGCC
GTTCTGATACTAGAGTCAGGCTTGGTAAATACAACCAAGGGCCTTAAGTG
CTAGAATCCAAAGCCAGGCTCTGTTAATGGTTCGGCACTTCCCTGACCAT
GTCTGGACTTATGATATCATGAGTCTACCTGTAAGGAATAAGAAAAGAGG
GAACTTCATGCACTGGTTATTGTGAACCATTCTGCCAACTGTTAAGTCAA
TTACATAATTATCTTTGTTATAGCTGGTGTCAGTTACCAGCCTGTGGGGC
CACGCGAATTGAATTTCTTACACTTTATCTGCCATACCCAGGTTTTTATT
GAGAACGAACACCTCACATCCGCCTTATGAAATCTGGACAGATTTTTCGC
CTCTATTCCCCCGCATTTCTTCCATTGTTTATTTTCCCGTTTTCCTTTCC
GGTTCCCTTCTTTCATTACTTTTCATCTTTTTCCCTTTCCGCCTTTCGTA
ATCCCCTAACACTTTTTTTTCCCTATTTCACTCTTTTACCCCCCTCCTGT
CTCCTTTGCTCTCCCTTTTTTCCG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTATCATT
CCGCTTAGGGGGCAGAAGCCTGGCTCTTCCTCAAGGACCCATTTGGGGTC
CACACACTGCTGGGTAACGGAGGTAATGGGTATGCAGTGATGGAGCCAGA
GAGCAAACTCACAAGTGGTGCCTCTTTCTTCTTTCTCAGCAGTGCGATGA
GCTTCCTGCTTTCTATCTCCCCGTGGGAGTGTGGTTGGAGGAAGGAGGTA
GCTGCAGGCAGAAGCAGGTCTTCCATGGAGCAGTTTGCCACCAGCCGCTC
AGACTGATATCCAGAGTGTGGTAGCTTGAATAGGAATGACCCCCATAGAC
TCATGTGTTTGAAAGCTTGCTCTATTAAGAGGTGTGGCCTTATTGGTGTA
GGTGTGGCCTTGTTGGAGGCAGTGGGTCACTAGAGTGGGTTTTGAGGGCT
AATAAACTCAAGGTGGGCTTCAGCCTCTTTCGGGGGTTTGTATTATGCAA
TGGTATATTCTTAATATTCTTTCCCAGCCCACATTCGCCTTCATCCCGGC
AGGTTTCCCGGCCTGGATGTTCCTTTCACCATTCTTCGGTAACCGGGCCC
CATCTCCATATTCTTTTTTTTTTATTCAATTATGTTGGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_b24.b1 MSMg01no365_b24.b1 CHROMAT_FILE:
MSMg01no365_b24.b1 PHD_FILE: MSMg01no365_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:32 2005
         (430 letters)



>mm_chr14_29977936_29978765
          Length = 830

 Score =  816 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaattctggtgtttgctgttttgccaattaatacatgagatcttattagatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaattctggtgtttgctgttttgccaattaatacatgagatcttattagatt 264

                                                                       
Query: 65  aaacataattaatgttgttaacattcattcatttatttggtcttcatcgggaaagcaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacataattaatgttgttaacattcattcatttatttggtcttcatcgggaaagcaaat 324

                                                                       
Query: 125 tgaatggagcagctacagcagacactgaatatttaatcagaccggtagcaaaaagccagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaatggagcagctacagcagacactgaatatttaatcagaccggtagcaaaaagccagg 384

                                                                       
Query: 185 aggacgagtcatgaaaagagctttgccgttctgatactagagtcaggcttggtaaataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggacgagtcatgaaaagagctttgccgttctgatactagagtcaggcttggtaaataca 444

                                                                       
Query: 245 accaagggccttaagtgctagaatccaaagccaggctctgttaatggttcggcacttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accaagggccttaagtgctagaatccaaagccaggctctgttaatggttcggcacttccc 504

                                                                       
Query: 305 tgaccatgtctggacttatgatatcatgagtctacctgtaaggaataagaaaagagggaa 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaccatgtctggacttaggatatcatgagtctacctgtaaggaataagaaaagagggaa 564

                                                                       
Query: 365 cttcatgcactggttattgtgaaccattctgccaactgttaagtcaattacataattatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcatgcactggttattgtgaaccattctgccaactgttaagtcaattacataattatc 624

                 
Query: 425 tttgtt 430
           ||||||
Sbjct: 625 tttgtt 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_b24.g1 MSMg01no365_b24.g1 CHROMAT_FILE:
MSMg01no365_b24.g1 PHD_FILE: MSMg01no365_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:33 2005
         (337 letters)



>mm_chr14_30136845_30137581
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattatcattccgcttagggggcagaagcctggctcttcctcaaggacccatttggggt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcattatcattctgcttagggggcagaagcctggctcttcctcaaggacccatttggggt 418

                                                                       
Query: 61  ccacacactgctgggtaacggaggtaatgggtatgcagtgatggagccagagagcaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccacacactgctgggtaacggaggtaatgggtatgcagtgatggagccagagagcaaact 358

                                                                       
Query: 121 cacaagtggtgcctctttcttctttctcagcagtgcgatgagcttcctgctttctatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cacaagtggtgcctctttcttctttctcagcagtgcgatgagcttcctgctttctatctc 298

                                                                       
Query: 181 cccgtgggagtgtggttggaggaaggaggtagctgcaggcagaagcaggtcttccatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cccgtgggagtgtggttggaggaaggaggtagctgcaggcagaagcaggtcttccatgga 238

                                                                       
Query: 241 gcagtttgccaccagccgctcagactgatatccagagtgtggtagcttgaataggaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gcagtttgccaccagccgctcagactgatatccagagtgtggtagcttgaataggaatga 178

                                                
Query: 301 cccccatagactcatgtgtttgaaagcttgctctatt 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 177 cccccatagactcatgtgtttgaaagcttgctctatt 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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