Query= MSMg01no365_d06.b1 MSMg01no365_d06.b1 CHROMAT_FILE:
MSMg01no365_d06.b1 PHD_FILE: MSMg01no365_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:38 2005
(280 letters)
>mm_chr14_106339032_106339710
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 272/275 (98%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 5 gaattcttccttttcgcagaatgtgaaagaaagtaaatagaatagagtattagagaactg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctttt-gcagaatgtgaaagaaagtaaatagaatagagtattagagaactg 263
Query: 65 atttgagagcaagggatcacaagacagaacttaaagcctccaataagtggctgctgagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttgagagcaagggatcacaagacagaacttaaagcctccaataagtggctgctgagta 323
Query: 125 aatagaggaaagtattcactgggatggagtgtagagtttttttttttttttaaa-tgact 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 aatagaggaaagtattcactgggatggagtgtagagtttttttttttttttaaaatgact 383
Query: 184 tatttatttatctattttacgtgagtacactgtatctgtcttcagacacaccagaagagg 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 tatttatttatctattttacgtgagtacactgtagctgtcttcagacacaccagaagagg 443
Query: 244 ggatcagatctcgtgacagatggccgtgagccacc 278
|||||||||||||||||||||||||||||||||||
Sbjct: 444 ggatcagatctcgtgacagatggccgtgagccacc 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 679
Length adjustment: 9
Effective length of query: 271
Effective length of database: 670
Effective search space: 181570
Effective search space used: 181570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no365_d06.g1 MSMg01no365_d06.g1 CHROMAT_FILE:
MSMg01no365_d06.g1 PHD_FILE: MSMg01no365_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:38 2005
(546 letters)
>mm_chr14_106547908_106548853
Length = 946
Score = 928 bits (480), Expect = 0.0
Identities = 531/552 (96%), Gaps = 8/552 (1%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgagccccattttttattttgagctcaccacagtgtcctttcctctgg 60
||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 926 tttgtttagctctaagccccattttt--ttttgagctcaccacagtgtccttttctctgg 869
Query: 61 cagactgggccaccacagcctttaggaaagccttggcatgggcagccccaccacctgctg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 868 cagactgggccaccacagcctttacgaaagccttggcatgggcagccccaccacctgctg 809
Query: 121 tgcctagttgctgcttctcagtgccagtg------agacacacacacacacacacacaca 174
||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 808 tgcctagttgctgcttctcagtgccagtgacacacacacacacacacacacacacacaca 749
Query: 175 cagcctcagaggatatgggataggagtttctgaggttgtggggtcacccacagagtccag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cagcctcagaggatatgggataggagtttctgaggttgtggggtcacccacagagtccag 689
Query: 235 agagcatatttctggccaaggaactgtgtgtctctctttacaacagcaaagttggtgtgg 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 688 agagcatatttctggccaaggaactgtctgtctctctttacaacagcaaagttggtgtgg 629
Query: 295 ttttggccaatgagagtaagaaactagtgagcactgagtttctgtgccactgatgcttta 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttttggccaatgagagtaagaaactagtgagcactgagtttctgtgccactgatgcttta 569
Query: 355 gtgagactttgggaagaagagtgagaaagtataactacagagtcgaaaaggaaaaagccc 414
|||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 568 ctgagacattgggaagaagagtgagaaagtataactacagagtctaaaacaaaaaagccc 509
Query: 415 ctgactatgcatagcgcatctccctgacttccctgaatgatctgacttgtatgtcagagg 474
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 508 ctgactatgcatagcgcatctccctgacttccctgaaggatctgacttggatgtcagagg 449
Query: 475 tatatgtggttaccatgaagatgaagggggaaagaaagatgcaggtaggaaaactacctg 534
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 448 tatatgtggttaccatgaagatgaaggggggaagaaagatgcaggtaggaaaactacctg 389
Query: 535 tgttactttggg 546
||||||||||||
Sbjct: 388 tgttactttggg 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
