Query= MSMg01no365_j03.b1 MSMg01no365_j03.b1 CHROMAT_FILE:
MSMg01no365_j03.b1 PHD_FILE: MSMg01no365_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:06 2005
(298 letters)
>mm_chr14_30531300_30531999
Length = 700
Score = 439 bits (227), Expect = e-128
Identities = 253/263 (96%), Gaps = 4/263 (1%)
Strand = Plus / Minus
Query: 1 tactgggttgcataatagaccgtaatttcatttgtaaggtgcgggcatttacatttgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tactgggttgcataatagaccgtaatttcatttgtaaggtgcgggcatttacatttgatt 331
Query: 61 ctcagttaagg--aaaaaaaatgtagcatgtgttatgatataattttatgtatttatgta 118
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctcagttaaggaaaaaaaaaatgtagcatgtgttatgatataattttatgtatttatgta 271
Query: 119 gttttctaaccagaacttcattttatgaatcaaagtagcatgtttgtttttagaaatgga 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttttctaaccagaacttcatattatgaatcaaagtagcatgtttgtttttagaaatgga 211
Query: 179 agtctgtctgtcttttcttctcttctcttctcttctcttctcttctcttctcttctcttc 238
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agtctgtctgccttctcttctcttctcttctcttctcttctcttctcttctcttctcttt 151
Query: 239 tcttctcttctctt--ctttttt 259
|||| |||| |||| |||||||
Sbjct: 150 tcttttcttttcttttctttttt 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 700
Length adjustment: 9
Effective length of query: 289
Effective length of database: 691
Effective search space: 199699
Effective search space used: 199699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_j03.g1 MSMg01no365_j03.g1 CHROMAT_FILE:
MSMg01no365_j03.g1 PHD_FILE: MSMg01no365_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:06 2005
(449 letters)
>mm_chr14_30372628_30373477
Length = 850
Score = 808 bits (418), Expect = 0.0
Identities = 442/450 (98%), Gaps = 1/450 (0%)
Strand = Plus / Plus
Query: 1 aaggtgaattgcccttaataaacaagccccacgtttatctgtctttccttgcattcacat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aaggtgaattgcccttaataaacaagccccacgtttatctgtctttccttgcattcacgt 260
Query: 61 tgtgtcattgtgtccatgagttctggtcaaggaatgttctctacccttcctagtcccctg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgtgtcattgtgtccatgagttctggtcaaggagtgttctctacccttcctagtcccctg 320
Query: 121 ttatcatggcgcttcctttcatctacctagctttccttaaatagagtgctggactacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcatggcgcttcctttcatctacctagctttccttaaatagagtgctggactacaaa 380
Query: 181 ggggtaaaaacgaaaatcaaaag-aaaaaaaatgaaacctaagacacaggatgtggaaag 239
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 381 ggggtaaaaacgaaaatcaaaagaaaaaaaaatgaaacctcagacacaggatgtggaaag 440
Query: 240 taactttcaaagggtgtttggagatgtggctctgctggtagagtgcttagctaacacaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 taactttcaaagggtgtttggagatgtggctctgctggtagagtgcttagctaacacgaa 500
Query: 300 caagaccctggctagatcccagcaccgaataaggcttcgtggtggcacctacataatccc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagaccctggctagatcccagcaccgaataaggcttcgtggtggcacctacataatccc 560
Query: 360 agtgctacaaggtggagataggaccttcaaagttatccttgactacataatagttcattg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 agtgctacaaggtggagataggaccttcaaagttatccttgactacataatagttcgttg 620
Query: 420 ttgttgttgttgctgttgttgttaagcagt 449
||| |||||||| |||||||||||||||||
Sbjct: 621 ttggtgttgttgttgttgttgttaagcagt 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 850
Length adjustment: 10
Effective length of query: 439
Effective length of database: 840
Effective search space: 368760
Effective search space used: 368760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
