BAC Information

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BAC

Clone NameMSMg01-366F10
Chromosome14 (Build37)
Map Location 122,070,961 - 122,071,202
singlet/doubletsinglet
Overlap geneDock9
Upstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577
Downstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366F10.T7 (MSMg01no366_f10.b1)MSMg01-366F10.TJ (MSMg01no366_f10.g1)
ACCAG474076AG474077
length819786
length of high quality
(start - end)
244 (74 - 317)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no366_f10.b1 PHD_FILE: MSMg01no366_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:09 2005CHROMAT_FILE: MSMg01no366_f10.g1 PHD_FILE: MSMg01no366_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAACCGC
GGAATTCATTGTTCTACCAGCTGAGTAGTACTCCATTGTGTAAATGTACC
ACATTTTCTGTATCCATTCTTCTGTTGAGGGACATCTGGGTTCTTTCCAA
CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGGC
CTTATTACAAGTTGGAACATCTTCTGGGTATATGCCCAGGAGAGGTATTG
CTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACT
GATTTCCAGAGTGGTTGTTCTCTTCTGTCAATGCTACCAACAATGGAGGA
GTGTCCCTCTTTCTCCACATCCTCGCCAGCATCTGTTTTTGTTTTTGTTT
TTGTTTGTTTTGTGCGCGCGTGTGCGCGTGTGTGTGTGTGCGTTTTTCAT
CTATCCCCCCCCCTCTCCCTCCTTTTCTTTTACTTCACTTCTCATCCTTA
CCCATCTATTTTCACTTTTTTCTTTTTCGCATCTTATCCTCTTTCCCTTT
CCCCACTTTTCCTTCTTATCTTTGCTTCAAACCTTACATATGTTTCACTA
TTNNTNNTTTTNCCTTTCTCTCCCTTCTTTTTCTTTTTTTTTTCCTTTCT
CTTTTTTCCCCTTCTTTTTTTCCATCTTTCCTATTTTTTCAATTTCCTAT
TATACCCCCCTATTTTCTTTTTTTACACCACTCTATTCCACTTTTTTTTT
CCTCTCCACCTATATTTCTCCCCTCCCACCTCTTCTTCTTTCTAACTTTC
CTCCCTTTTTTTTTTTTTC
NTTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGAGTTATATGAGTTATACGG
GCATGAAGTTGGGGTGGGATGGGGGCTGAATGTAGGAAGATGTAGGGCAA
GGAGTAAGGGTAAATATGATCAAACTACATTATATTCATGTAATTAAAAT
ACAGTGTATACATGTAATGAAATTCTCAAAGAATGTTAATAAAAATTCTA
CTATCTTGACACTACTTACCGAGAAACAATATCAGATGGTCATAGAGAAG
GACCATGTTATACAGAGAATTTCGTCCTGTTATCCCAAGGCACATATATC
ATATCAACGAGTATTCCATTTTAGATGTGGCCTCCCTAGGTAAAAGCTAA
ATCGGAATAACCACTGCCCCCAGCCCTGACTGGTTTCAGAACTGTGATAA
ATAATCCTATACTGTATTACTTACTACGTTTTGGTTGACTGGTTACTCCC
CGTGTTTGTTTTACTTCTTTTCCACCTTCCATTAGCCTTTGCTTTATTGG
TTGTCCTGATTTTATTTACCCTTTACGCTTCTCTTCTCCATGCACCCTTT
TTTTACTTTTTTTTTTCTCTTATTCAACTTTCTTCTATTACACTCACATT
ATATTTATACTCTTTTTTTCTTTCTTTTTCCCGATTTTCCTCTTCATTCT
ACTCTTTATTTTTTATACCTCTCCCTCTTCTTTTCTTTTTCTTCTTTCCC
TCCTTTTTCTCACGGTCTTTTTTTTTCTTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_f10.g1 MSMg01no366_f10.g1 CHROMAT_FILE:
MSMg01no366_f10.g1 PHD_FILE: MSMg01no366_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:09 2005
         (242 letters)



>mm_chr14_122070761_122071402
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggagttatatgagttatacgggcatgaagttggggtgggatgggggctgaatgtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggagttatatgagttatacgggcatgaagttggggtgggatgggggctgaatgtagg 260

                                                                       
Query: 61  aagatgtagggcaaggagtaagggtaaatatgatcaaactacattatattcatgtaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgtagggcaaggagtaagggtaaatatgatcaaactacattatattcatgtaatta 320

                                                                       
Query: 121 aaatacagtgtatacatgtaatgaaattctcaaagaatgttaataaaaattctactatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaatacagtgtatacatgtaatgaaattctcaaagaatgttaataaaaattctactacct 380

                                                                       
Query: 181 tgacactacttaccgagaaacaatatcagatggtcatagagaaggaccatgttatacaga 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tgacactacttaccgagaaacaatatcagatggccatagagaaggaccatgttatacaga 440

             
Query: 241 ga 242
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)