BAC Information

Click to search

BAC

Clone NameMSMg01-367C07
Chromosome14 (Build37)
Map Location 65,885,849 - 65,886,331
singlet/doubletsinglet
Overlap geneFbxo16
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286
Downstream geneZfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C07.T7 (MSMg01no367_c07.b1)MSMg01-367C07.TJ (MSMg01no367_c07.g1)
ACCAG474686AG474687
length732751
length of high quality
(start - end)
395 (15 - 409)483 (81 - 563)
definitionCHROMAT_FILE: MSMg01no367_c07.b1 PHD_FILE: MSMg01no367_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:13 2005CHROMAT_FILE: MSMg01no367_c07.g1 PHD_FILE: MSMg01no367_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTCGGAGAGGATCCGCGGAATTCTCAGTTTACCTCTGTACCCC
ATTTTTTGGTTGGGTTGTTTGCTTTTGTGGTGATTAACTTCTTGAGTTCT
TTATATATTTTGTATATTAGCCTTCTATTGGATGTGGTGTTAGTAAAGAT
TTTTTCCCAAACTGTAGGTTGCCAAATTGTCTTATTGAATATGTCATTTG
CCTTACAGAAGCTTTCCAGTTTCATGAGGTGCCATTTATCAATTCTTGAT
CTTAGAGCATGAGCCATTTGGAGTTCTGTTTAGGAAATTTCCCTCTGTGC
CACAGAACTCAAAAAGGTCAACAAGCTGAAGGGCCCAAGTGAGGATGCCT
CAGTCTCACTTGGGAAGGAGAAGAAAGCAATCATAAGTGGGGATGGAGGG
AGGGAGGGATCTGGAGGGAAAGTTTATGGGNTTATTTNTTTTTTTGTTTT
TTTTTTGTTTTTGTTTTTTTTCTTCTTTCCCCCCCCCTTCTTTTCCCTTT
TCCCCTTTTCCTCTTCATTATTCCCCTTTTCTTCTATCCCTTTTTCCCCT
TCTTTTCTTTTTCCCCTTTCTCTCTTCCTTTTTTACCCCCTCTTTCCCTT
TTCACCTTTTTCCTCTTTTCTTTCCTCCCCTCTTTTTTTCCCTTCCCTTT
TTTCTCCCTTTGTTCTTCTTCCCCCCTTTCCCCCCCACACCACTTTTTCT
CCTTCTCTTCCCCTTTCACTTTTTCATCTTCT
TTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTAAACCTACCCGCCC
TCTATTTCTGATACTGTGCGAGATCCCCTTTGTCTGGTGATTTTACAGTG
TACTGTGGGAGAATTGTGTGTTAGCAGAGAAACTCAATCCTAGTCTTCGT
TGTAACCTCCGAATAAAACTCTTGACAACCTTGAGTATTTCCTCTGTGCC
AGGGTCAGCATATTCTGAGTTTCAGTGTGCAGTCCCACAAGGTTTAATTC
TCAAACTCCCCCTCCCCATGCTCTTCCAGGACATTTTCCCCCTTCCATTG
AATAACATTTATTGAGCATCTACTATGTACGGCTGTGATACTGTGACTGG
AGTTTAAATGAGCAGTGACAGAATACACGAGCCCCAAAGCATCAGGGCCT
CATGCCACCGTCCTTACAGTGGTCAGGCTGTCAGTGGATTTGGACAGAGT
ACAGGAAAAGGGGGCACTAGGTTGAAATAGTTACATTGAGTTGACCCAGA
CTTCGAGTTGAGGAATTGGAATTCCAGTCATTAGTGAGATGAGACGGTTT
GTCAGCACAGAACCTTGCAGAGGATGGCGGATCTTTGTTATTTTAAAGTC
AACCTGGTTCACCTAGCCAGTTCCATGCCACACTATGTTTATTGAGGTAT
ACTCTTTCCCATAACTAATTACAATTTCTTACCTTACCCTTTCTATTTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c07.g1 MSMg01no367_c07.g1 CHROMAT_FILE:
MSMg01no367_c07.g1 PHD_FILE: MSMg01no367_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:13 2005
         (483 letters)



>mm_chr14_65885649_65886531
          Length = 883

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttaaacctacccgccctctatttctgatactgtgcgagatcccctttgtctggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttaaacctacccgccctctatttctgatactgtgcgagatcccctttgtctggtga 260

                                                                       
Query: 61  ttttacagtgtactgtgggagaattgtgtgttagcagagaaactcaatcctagtcttcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttacagtgtactgtgggagaattgtgtgttagcagagaaactcaatcctagtcttcgt 320

                                                                       
Query: 121 tgtaacctccgaataaaactcttgacaaccttgagtatttcctctgtgccagggtcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaacctccgaataaaactcttgacaaccttgagtatttcctctgtgccagggtcagca 380

                                                                       
Query: 181 tattctgagtttcagtgtgcagtcccacaaggtttaattctcaaactccccctccccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattctgagtttcagtgtgcagtcccacaaggtttaattctcaaactccccctccccatg 440

                                                                       
Query: 241 ctcttccaggacattttcccccttccattgaataacatttattgagcatctactatgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttccaggacattttcccccttccattgaataacatttattgagcatctactatgtac 500

                                                                       
Query: 301 ggctgtgatactgtgactggagtttaaatgagcagtgacagaatacacgagccccaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctgtgatactgtgactggagtttaaatgagcagtgacagaatacacgagccccaaagc 560

                                                                       
Query: 361 atcagggcctcatgccaccgtccttacagtggtcaggctgtcagtggatttggacagagt 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagggcctcatgccactgtccttacagtggtcaggctgtcagtggatttggacagagt 620

                                                                       
Query: 421 acaggaaaagggggcactaggttgaaatagttacattgagttgacccagacttcgagttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaggaaaagggggcactaggttgaaatagttacattgagttgacccagacttcgagttg 680

              
Query: 481 agg 483
           |||
Sbjct: 681 agg 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)