BAC Information

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BAC

Clone NameMSMg01-368F10
Chromosome14 (Build37)
Map Location 68,277,363 - 68,496,674
singlet/doubletdoublet
Overlap geneCdca2, Kctd9, Gnrh1, Dock5
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368F10.T7 (MSMg01no368_f10.b1)MSMg01-368F10.TJ (MSMg01no368_f10.g1)
ACCAG475589AG475590
length755753
length of high quality
(start - end)		570 (45 - 614)472 (69 - 540)
definitionCHROMAT_FILE: MSMg01no368_f10.b1 PHD_FILE: MSMg01no368_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:45 2005CHROMAT_FILE: MSMg01no368_f10.g1 PHD_FILE: MSMg01no368_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,277,363 - 68,277,928)(68,496,203 - 68,496,674)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGACTTTAATATGAGTAAATGCAGGAAAAGGGACGAAATAAAAC
ATATCCTATTGAAGGAAATGAGGGCTCCTTAAGAAAGGAAAACACACAGA
GGAAGGACACGGGCATATCAGGATACAAATAGGCCCCCGGGGAGCCGTGG
ATTCCACAGGCATGATGTTATTGAAGTACTTGATACTGGAGTAAGCACCT
GCAGAGATGAATTACATCCTTGTTCAGACCACTAACGCTGGGTACTGACA
TCGCAGGAAGCGCTTATGGTATATTTCAAATCCCTTGCCCACTACATAAA
TATCCAATAAATCAATCAATGATAAAGGACACTAGCTAAAAGGCTTAAAA
TGCTGAACAAGCCACCTCCCCTCCTCAGAGGAGCCCCGCCACCTTTAATT
TATTAGGGGTTTCCTAGTCACTCACACCTCCGGCCCTGGAGAGGCGAGAT
GAGTGATTAACACCTTCAGTGCTGGAGTGTGGAGAGGCAGGAAGGTTGGC
GTCGGGCATGGCTTTGCTAACAGCTGGGTTTTTTAAAAGTCATTATTTGT
ATATATTTATAGGGAACATTACGATAATTTANTACGTATGCCCAGTGCAT
AGTAATCAAATTAGTAAGCACTTCTCAAAATTACAAATACCTACCTTGGT
CACCCCCCCCCCATAAATTTAAGTGGAGAACGAGCTTGGGGCCATTGGTC
CCCCN

ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTGTAGTTGTTGCCATGGAGTGTTTGAATG
TCAGTGGTAGAATGCTGGGCACTCAGAGAAGGATGTCACCCACTGTGTTT
TCAAAGTGTCTTGGCATGAGTGAGGAGACAGAACACATACAGAGTTCATG
ACCTCCAACTCGCATGTCAATTGCACACGGATTTTGACATCGGATTATAT
TCCTTCCAGTAGTGTTTCTTTTATGGGATTCATTTTTTTAAATAGTGCCT
GGCATGCCCGACACTCTTGGTGAGGCTCTTGTATCTGCTTAGTACTTCGA
GTTCTTGGCTTGAGTCTTGAATTCCTTTATTACTTTTAGGTGGTTGAGGA
CTGGGGGCAGGAGTGCTTTGCAAACAGAAGACCTGCAGGAAATGCCGAGT
AATGACTTGTGTTGGTTCACCCTCCCTGCTCCCGTCTTCTTTTAAAACAA
ATAAACAGAATGGAAACGCCCACATTACTTACTGCCAGAGAGAATGCCTA
GGCAAGGCTGGCACCATTTCTTGGCCTTCTGGGGTTTATGTCTTGCAGCT
TCCTGTTGGTGATTTGGGGACTCTCCCTTTGCACCTTCGGGCCCCACCCC
CCTTCTGAGAAAAGCATACCTTGATCTATGTGGACTGTTCCTGGGATGGA
ACCTTAAACCCTCCCCCAAATTTTTTCTTTTTAAATTTCTTGCCACCAAA
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_f10.b1 MSMg01no368_f10.b1 CHROMAT_FILE:
MSMg01no368_f10.b1 PHD_FILE: MSMg01no368_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:45 2005
         (570 letters)



>mm_chr14_68277159_68278128
          Length = 970

 Score = 1056 bits (546), Expect = 0.0
 Identities = 561/566 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgactttaatatgagtaaatgcaggaaaagggacgaaataaaacatatccta 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgacattaatatgagtaaatgcaggaaaagggacgaaataaaacatatccta 264

                                                                       
Query: 65  ttgaaggaaatgagggctccttaagaaaggaaaacacacagaggaaggacacgggcatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgaaggaaatgagggctccttaagaaaggaaaacacacagaggaaggacacgggcatat 324

                                                                       
Query: 125 caggatacaaataggcccccggggagccgtggattccacaggcatgatgttattgaagta 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggatacaaataggcccctggggagccgtggattccacaggcatgatgttattgaagta 384

                                                                       
Query: 185 cttgatactggagtaagcacctgcagagatgaattacatccttgttcagaccactaacgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgatactggagtaagcacctgcagagatgaattacatccttgttcagaccactaacgc 444

                                                                       
Query: 245 tgggtactgacatcgcaggaagcgcttatggtatatttcaaatcccttgcccactacata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtactgacatcgcaggaagcgcttatggtatatttcaaatcccttgcccactacata 504

                                                                       
Query: 305 aatatccaataaatcaatcaatgataaaggacactagctaaaaggcttaaaatgctgaac 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatatccaataaatcaatcagtgataaaggacactagctaaaaggcttaaaatgctgaac 564

                                                                       
Query: 365 aagccacctcccctcctcagaggagccccgccacctttaatttattaggggtttcctagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagccacctcccctcctcagaggagccccgccacctttaatttattaggggtttcctagt 624

                                                                       
Query: 425 cactcacacctccggccctggagaggcgagatgagtgattaacaccttcagtgctggagt 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cactcacacctcctgccctggagaggcgagatgagtgattaacaccttcagtgctggagt 684

                                                                       
Query: 485 gtggagaggcaggaaggttggcgtcgggcatggctttgctaacagctgggttttttaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggagaggcaggaaggttggcgtcgggcatggctttgctaacagctgggttttttaaaa 744

                                     
Query: 545 gtcattatttgtatatatttataggg 570
           |||||||||||| |||||||||||||
Sbjct: 745 gtcattatttgtgtatatttataggg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_f10.g1 MSMg01no368_f10.g1 CHROMAT_FILE:
MSMg01no368_f10.g1 PHD_FILE: MSMg01no368_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:45 2005
         (472 letters)



>mm_chr14_68496003_68496874
          Length = 872

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtagttgttgccatggagtgtttgaatgtcagtggtagaatgctgggcactcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcttgtagttgttgccatggagtgtttgaatgtcagtggtagaatgctgggcactcagag 613

                                                                       
Query: 61  aaggatgtcacccactgtgttttcaaagtgtcttggcatgagtgaggagacagaacacat 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 612 aaggatgtcacccactgtgttttcaaagtgtcctggcatgagtgaggagacagaacacat 553

                                                                       
Query: 121 acagagttcatgacctccaactcgcatgtcaattgcacacggattttgacatcggattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acagagttcatgacctccaactcgcatgtcaattgcacacggattttgacatcggattat 493

                                                                       
Query: 181 attccttccagtagtgtttcttttatgggattcatttttttaaatagtgcctggcatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attccttccagtagtgtttcttttatgggattcatttttttaaatagtgcctggcatgcc 433

                                                                       
Query: 241 cgacactcttggtgaggctcttgtatctgcttagtacttcgagttcttggcttgagtctt 300
           ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cgacactcaaggggaggctcttgtatctgcttagtacttcgagttcttggcttgagtctt 373

                                                                       
Query: 301 gaattcctttattacttttaggtggttgaggactgggggcaggagtgctttgcaaacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaattcctttattacttttaggtggttgaggactgggggcaggagtgctttgcaaacaga 313

                                                                       
Query: 361 agacctgcaggaaatgccgagtaatgacttgtgttggttcaccctccctgctcccgtctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agacctgcaggaaatgccgagtaatgacttgtgttggttcaccctccctgctcccgtctt 253

                                                               
Query: 421 cttttaaaacaaataaacagaatggaaacgcccacattacttactgccagag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cttttaaaacaaataaacagaatggaaacgcccacattacttactgccagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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