BAC Information

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BAC

Clone NameMSMg01-369B01
Chromosome14 (Build37)
Map Location 56,783,227 - 56,783,653
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095
Downstream geneGzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369B01.T7 (MSMg01no369_b01.b1)MSMg01-369B01.TJ (MSMg01no369_b01.g1)
ACCAG476143AG476144
length742785
length of high quality
(start - end)
332 (19 - 350)426 (67 - 492)
definitionCHROMAT_FILE: MSMg01no369_b01.b1 PHD_FILE: MSMg01no369_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:41 2005CHROMAT_FILE: MSMg01no369_b01.g1 PHD_FILE: MSMg01no369_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTAAACCACTCCTATATGGAGAGGATCCGCGGAATTCTTTGTTCTTTTC
TGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCT
TGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAG
GTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGT
GTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAA
TTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCC
CCTGGGCCCATATCTTCAAGGCTTTTCCCCCACTTTCTCCTCTATAAGCT
TAACTGTCTCTGGCTTTATGTGAAGTTCTTTGATCCATTTACATTTGACC
TTACTACCAGGACATAAGCCTGGATCGATTCCCATTCCTCTACCCGATAC
CTCCCTAGCTGTGGCCTCCCCATTTGCGTGACCATGCTGTTTTTTTTTCC
CTTGGCCGGTCTCTTGTTTTCTTTCGGTCAAAACCACGTGACTCTCCGCT
CGTTCGTCTTCTCTCCTCCGTCCTCCCCTCTCCCCCCGGTGCGTTCCCCC
CCCTCTCCCCTTCCCTCTCTCTCCCCTTTTCTTCCCCCCTTTCGCCCCCC
CGCTTCGTTTTGTCCACGCCTTCTCTCGTTTCCCCCGTTTTTCCCTGCCT
TTCCTATCCCCTTCCACTCTCTTTTTCCCTCCCCTTTCTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATGGACAGAGAAACTCATCAAGACCTCCAGTTT
GTCAAGTACCATGGCTTATCCTAGAATCTCAGCCTCCCCCTGCTGACCAC
ATAGGGATATGTCAGTTTGTGAAATCTAGAAATCCAAGGGATGCTAGGCT
AGAAGTATCTCTTGACATCAACAATCAACAATTTTAGGTCTCTGGTTTTG
TATCAGGTACACAGTAGACTCCTTCTTCAGCTTTATCCTCTTGTTTCTTT
GGACAGGTCAACGTGACACAGATGAATCTATATCTGGAATGCACAGAAAA
AATCATGTTTTAAAAAAATGATTAAATTCTCTTGATTCTAACAGTTCTAA
GTCCCTGGCATTCTTGGGTTCAGAATGCAGTGTGTAGAATTGGAAGGAAG
TTGGAAGACTTCCAACTCTCTGGATTTCAGGGTACTTCAGGTAGGGCCCC
CAGTGTAATTTGTGGACAGAACAAAGGCCAGTAGAGAGGATTTGGCTTCC
TTGAAATTCAATCGCACACTCCATCCGTCTAGCTGAAGTACAAGATTGCC
CATGCTGATCCTTGACCCTATTCCTTTTCTTCACTACAGTATTTTGGTTA
AACACATTTTTTTCCTTCCCCCAAACATCCCCCCTTTTTGTGCTGGATTC
TTTTCCAAAGGACATCCTCTCCCTCCTTCTCTCTTCCGGGGATTATTGTT
TTATTATCTTTTTCCTCCCTCGGTGTCTCTACGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_b01.g1 MSMg01no369_b01.g1 CHROMAT_FILE:
MSMg01no369_b01.g1 PHD_FILE: MSMg01no369_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:41 2005
         (426 letters)



>mm_chr14_56783027_56783853
          Length = 827

 Score =  756 bits (391), Expect = 0.0
 Identities = 418/427 (97%), Gaps = 1/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggacagagaaactcatcaagacctccagtttgtcaagtaccatggcttatcctagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 catggacagagaaactcatcaagacctccagtttgtcaagtaccatggcttatcctagaa 568

                                                                       
Query: 61  tctcagcctccccctgctgaccacatagggatatgtcagtttgtgaaatctagaaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctcagcctccccctgctgaccacatagggatatgtcagtttgtgaaatctagaaatcca 508

                                                                       
Query: 121 agggatgctaggctagaagtatctcttgacatcaacaatcaacaattttaggtctctggt 180
           || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 507 agagatgctaggcaagaagtatctcttgacatcaacaataaacaattttaggtctctggt 448

                                                                       
Query: 181 tttgtatcaggtacacagtagactccttcttcagctttatcctcttgtttctttggacag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 447 tttgtatcaggtacacagtagactccttcttcagctttatcctcttgtttctttagacag 388

                                                                       
Query: 241 gtcaacgtgacacagatgaatctatatctggaatgcacagaaaaaa-tcatgttttaaaa 299
           |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 387 gtcaacatgacacagatggatctatatctggaatgcacagaaaaaaatcatgttttaaaa 328

                                                                       
Query: 300 aaatgattaaattctcttgattctaacagttctaagtccctggcattcttgggttcagaa 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaatgattaaattctctcgattctaacagttctaagtccctggcattcttgggttcagaa 268

                                                                       
Query: 360 tgcagtgtgtagaattggaaggaagttggaagacttccaactctctggatttcagggtac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 tgcagtgtgtagaattggaaggaagttggaagacttccaactctctggatttcagtgtac 208

                  
Query: 420 ttcaggt 426
           |||||||
Sbjct: 207 ttcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space:   341106
Effective search space used:   341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)