BAC Information

Click to search

BAC

Clone NameMSMg01-369C24
Chromosome14 (Build37)
Map Location 82,910,309 - 82,910,640
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369C24.T7 (MSMg01no369_c24.b1)MSMg01-369C24.TJ (MSMg01no369_c24.g1)
ACCAG476235AG476236
length781734
length of high quality
(start - end)
389 (43 - 431)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no369_c24.b1 PHD_FILE: MSMg01no369_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:50 2005CHROMAT_FILE: MSMg01no369_c24.g1 PHD_FILE: MSMg01no369_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATTTTCTTATCCTGAATTATCTTCCTTATTTCATTTGGCCATTTATT
TGTGTATTCATAGATGACAAGCAGAGGAGTTTATTCTGGAACTTTAAAGT
TTATTCAGATATTTGGTCCTCTTGTAGGAATGTTCTTTTGAATGCTGTGT
CATGCATTTAATATACATTTTCTCACCAGGCTCCATTACTATGAGACTGG
TAATTTTTGAAGTAGAAATATATTGTCTCATTGTTTTGTACTGCTTGTGG
TAATTTTCATAGGATCCAGGCTTCTGAAAATAGGTTGTTGGTTGTGCCTT
TTAATATAAGACTTAGCACACTGGGTTACAGCTCANAGGTGGTGCAATGA
TCTAAAAGGTCTGAAGGAATCCCTTATAGGCTAGCATAAGAGGAACACAG
CTCTCTTCAGGCTATACTTTCTTCTACTGTGTGAACAGCTGGCTTCTGCT
GAAAAAGATGATAGTTTTATCAAAGCTTAAAAAATATTGGCCATATTAAA
ATAACCAATTTTGGACCATAAGTCCCCAAAAGCTGGAATTAAAATAACCC
AATTAAAATTTATTCTTAATAAACTCTAAAGGGGGATAAATTTATTATTT
CCGGAAATATTATTTCCCCCCCTTATTCCACTTTGCGCTTTTTATATTAA
AAGTGTTGTCCACCTTTTTTTCTTTTCTTTAAAACAAAAACCACCCTGGT
TTCATTTTATTTTTTTTTTTTGCTTGCCCTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAAAG
CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTG
GAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCC
CTACCTTTTCAACAAAGTACTTGAAGTATTAGCCAGAGCAATTAGACAAC
AAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCA
CTTTTTGCGGATGATATGATAGTATATATAAGCGACCCTAAAAATTCTAC
CAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATA
AAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAG
GCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAAAA
TATNAAATATCTTGGCGTGAATCTAACTAAGGAAGTGAATATCTGAATGA
TAAAAACTTCAAATCTCTGAGGAAAGAAATANGGAAGATCTCCGAAATGG
AAAGATCTCCCTGCTCCTGGATGGAGGAACACATTGAAAAATGGTATCTT
GCCAAAGCATCCACGATCCATGCATCCCCTTCAAATCCACTCAATCTTCA
CGAATGAAGGAGAATTGGCATTTGTCTGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_c24.b1 MSMg01no369_c24.b1 CHROMAT_FILE:
MSMg01no369_c24.b1 PHD_FILE: MSMg01no369_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:50 2005
         (389 letters)



>mm_chr14_82910309_82911097
          Length = 789

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattttcttatcctgaattatcttccttatttcatttggccatttatttgtgta 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaattccattttcatatcctgaattatcttccttatttcatttggccatttatttgtgta 273

                                                                       
Query: 65  ttcatagatgacaagcagaggagtttattctggaactttaaagtttattcagatatttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttcatagatgacaagcagaggagtttattctggaactttaaagtttattcagatatttgg 213

                                                                       
Query: 125 tcctcttgtaggaatgttcttttgaatgctgtgtcatgcatttaatatacattttctcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tcctcttgtaggaatgttcttttgaatgctgtgtcatgcatttaatatacattttctcac 153

                                                                       
Query: 185 caggctccattactatgagactggtaatttttgaagtagaaatatattgtctcattgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 caggctccattactatgagactggtaatttttgaagtagaaatatattgtctcattgttt 93

                                                                       
Query: 245 tgtactgcttgtggtaattttcataggatccaggcttctgaaaataggttgttggttgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  tgtactgcttgtggtaattttcataggatccaggcttctgaaaataggttgttggttgtg 33

                                           
Query: 305 ccttttaatataagacttagcacactgggtta 336
           ||||||||||||||||||||||||||||||||
Sbjct: 32  ccttttaatataagacttagcacactgggtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)