BAC Information

Click to search

BAC

Clone NameMSMg01-369K16
Chromosome14 (Build37)
Map Location 73,287,912 - 73,288,342
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369K16.T7 (MSMg01no369_k16.b1)MSMg01-369K16.TJ (MSMg01no369_k16.g1)
ACCAG476597AG476598
length741774
length of high quality
(start - end)
497 (61 - 557)435 (76 - 510)
definitionCHROMAT_FILE: MSMg01no369_k16.b1 PHD_FILE: MSMg01no369_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:27 2005CHROMAT_FILE: MSMg01no369_k16.g1 PHD_FILE: MSMg01no369_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGATTTACACCTAAACATATTAAATGCAATATACAGAAAACCAGTAGCC
AACATCAAACTAAATAATAGAGAAACTAGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTCTCTCCCTACCTATTCAATATAGTACTT
GAATTCCTAGCCAGAGCAATTAGACAACAAAAGGTGATCAAAGGGATACA
AATTAGAAAGGAAGAAGTCAAAATGTCATTGTTTGCAGATGATATGATAG
TATACTTAAGTGACCCCAAAAAGTCTACCAGAGAACTCTTAAACCTGATA
AACAACTTCAGTAAAGTAACTGGATATAAAATTAATTCAAACAAATCAGT
GGCCTTTCTCTACACAAAGGATAAGCAGGTGGAGAAAGAAATTAGAGAAA
CAACACCCTCACAATAGTCACAAATAATATAAAATATCTTGGTGTGACTC
TAACTAAGCAAGTGAAAGATCTGTATGATAAGAACTTCAAGTTTCTGAAG
AAAGACATCGAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATG
GGATGGCAGAATTAATATAGATAAATGGCTATCTTGCTGAAAGCAATCTA
TCTATTCTATGTAATCCCCTTCTTATTTCCTTCCTCATTCTTCACTGAAC
TTGAAGGGGCCATTTGGAAATTCTTTTGGTATTACTCTCAC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTCTTGGTGGTTACAAGCAATCA
TTTTATTGACTGATACTTTTAACAACAGGGTACATAGTGCTGAGTGTGCA
CCAAAGTGGTGACAATCAGAGTCAGTGGGCTCTGGTTGCTTCAAAAGATG
GTCAAGGCTGCTGTAGGTAACAAAGGGTGCTGTAGGCCAAGTCAAGACCA
AAGCCCAACCATGGAAAAGTAGCTACTTCTTCTTCTTCTTTTTTTTTTTT
TGGCATTGTCTTCCTTCAGCTCTGAGCTAGACAGTCCATCATTTTTCTTC
ATGTAATGCTCAGCAGCTTGACCTATGAATGTAGAAGTGACAGAGTAAAT
GGGATGATTCTGTATGGTCATCGATCTTTTCCACAAGCAGCCGTGACCTC
GGGCTTAAGAGATATTTTTCAAACCATACCTCTAGCTGGAAATGGGTTTA
AAGGTTTATTTTGAAGAGAATGGATTGCAACTGTCCAGCTTGGCTTTCTA
AACTTTTCATCTCAAACCAGCCTTTCGAGGTTGTCTGAAGCTTTAAGAAG
TGTGGGGGGGTTAATTTTACCCCAGAATCCCTCCCAAACGGTTTTGGTTG
TGGTTTTCTTTTTCTAAATAATCCCCCCAACTTTTGTTCTCCCTTTTTTT
TAGTTTCTTTTTTCTTAAAATTGGTAATCCCCGGTTTTTTCCTTTTACGG
GATGTTTCCTCTTTTTCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_k16.g1 MSMg01no369_k16.g1 CHROMAT_FILE:
MSMg01no369_k16.g1 PHD_FILE: MSMg01no369_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:27 2005
         (435 letters)



>mm_chr14_73287712_73288542
          Length = 831

 Score =  770 bits (398), Expect = 0.0
 Identities = 424/438 (96%), Gaps = 10/438 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtcttggtggttacaagcaatcattttattgactgatacttttaacaacagggtacat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 631 aggtcttggtggttacaagcaatcattttattgactgagacttttaacaacagggtacat 572

                                                                       
Query: 61  agtgctgagtgtgcaccaaagtggtgacaatcagagtcagtgggctctggttgcttcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 571 agtgctgagtgtgcaccaaagtggtgacaatcagagtcagtggcctctggttgcttcaaa 512

                                                                       
Query: 121 agatggtcaaggctgctgtaggtaacaaagggtgctgtaggccaagtcaagaccaaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agatggtcaaggctgctgtaggtaacaaagggtgctgtaggccaagtcaagaccaaagcc 452

                                                                       
Query: 181 caaccatggaaaagtagctacttcttcttcttctttttttttttttggcattgtcttcct 240
           |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 451 caaccatggaaaagtagctacttcttctt-------ttttttttttggcattgtcttcct 399

                                                                       
Query: 241 tcagctctgagctagacagtccatcatttttcttcatgtaat---gctcagcagcttgac 297
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 398 tcagctctgagctagacagtccatcatttttcttcatgtaataatgctcagcagcttgac 339

                                                                       
Query: 298 ctatgaatgtagaagtgacagagtaaatgggatgattctgtatggtcatcgatcttttcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctatgaatgtagaagtgacagagtaaatgggatgattctgtatggtcatcgatcttttcc 279

                                                                       
Query: 358 acaagcagccgtgacctcgggcttaagagatatttttcaaaccatacctctagctggaaa 417
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 278 acaagcagccgtgacctccggcttaagagatatttttcaaaccatacctctggctggaaa 219

                             
Query: 418 tgggtttaaaggtttatt 435
           ||||||||||||||||||
Sbjct: 218 tgggtttaaaggtttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 831
Length adjustment: 9
Effective length of query: 426
Effective length of database: 822
Effective search space:   350172
Effective search space used:   350172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)