BAC Information

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BAC

Clone NameMSMg01-369M11
Chromosome14 (Build37)
Map Location 115,786,313 - 115,973,721
singlet/doubletdoublet
Overlap geneGpc5
Upstream geneLOC100043821, LOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M11.T7 (MSMg01no369_m11.b1)MSMg01-369M11.TJ (MSMg01no369_m11.g1)
ACCAG476682AG476683
length770759
length of high quality
(start - end)
248 (60 - 307)247 (61 - 307)
definitionCHROMAT_FILE: MSMg01no369_m11.b1 PHD_FILE: MSMg01no369_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:36 2005CHROMAT_FILE: MSMg01no369_m11.g1 PHD_FILE: MSMg01no369_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,973,474 - 115,973,721)(115,786,313 - 115,786,557)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATC
TTCCGCTATGGAGTGTGAAATGCAGGATATTAAGACCTTAAGAAGTGATT
ATTTAAATGATTTAATTATATCAAATGTTTTTCCACTGATGTTATAATTA
TGTTTTAATGAACCAATCTTAAAATAAAAACAAGTACTGTCTAAATGTTT
AACATGAAAACCCTATTTCATTTGTAGCTCACACTAGTTTTCTAGTTTTC
AAATGTAATTTTTGTTAAGTAATTTAGACTAAATTTTATGTTGTTAAATA
AATCAGTATATTACTTATAAATCATGTCTTTAATTCCCAGGGTTTTTTTC
CCTATCATCACAGTATCACAATTGTCAACAAAATCCCCTACAATTATTAC
TTCTATGATGATTTCTGCATATCATAATTTTCTATCATATAAATTCTAAA
TATATAGTTTTCATGATTGTAAAAATATGCCTAATAACATATGCTATTGT
TAATACATAATACTTTGATCCATGTGCATTATTATTACTCTATATCCTTT
TTCCCATACTCTTTTTGTGCTCTACCTTCTCATTTATATTGCCTCATTAT
CTTGCATTTATTACTACCTACTAACTTTTTATTATAGAATCTGTTTCATT
TAATTTCCTTTCTTTCCACCTTCCTACCTTTTTTAATTTTTTACTCCCCT
TTTTTGCTTTGTTCCTCCTTTATTCTCATCCTATTTTCCCTTTTTTTATA
ATTTACTTATTTTTATTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCCTGCGAAATTCTTTTCAGCCACAGTGAAGCATTAAATAGATTTTAGAA
ACATTTTGTTCCTAACGCTTCAAAGTCCCTTAGAAGAAACATCTCCTTGT
ATAGTAAAATGCTTTGTTTTTCACATAAGAAGTAAATTTTAAGACTTTGG
AAAATGGCTTTTATTATTTCAAATAATTTAGGGGCAGAACTTAATGGAAT
TATACTGTTACTCATTCTAGACTCTAGCTAAACTGTATGACATGCTTTTG
AAGAATGTTTTTCTGGTGAGATACAGGATGTATACCATTTGGTTAGTGTC
ACTGCAGTGTCAGAATTCATAAAAGGCCATCTTCCTTTCAGCCAGTGTCT
CTGCTCTGCTCTGAACACAGAAGTCAGAATGATCTTTTCCATGACTGACT
GTTGATCTTATAGTAGAATCTAAAGGCTTTATGTTGACTTCCAGAACACT
GTCTGTCTGGGCTCTCCTCCCACCTTTGCCCTCCTGAGAACTATTCTTGG
CAGTTCTTGGTTCCCCTCGCTGGATCTGATTTTGGACGCTCCTCTGGTTA
GTCCTTTCTTTCTTTTGAATTTCTCTGGTCAGATAATGATCACTGTATTT
TTTCTTTTGATCTTTATCTTCCATATTTCTTATGAGGTGGATTTTGTCTT
CTCCCTTTTGATTTCTTCCTCCTCTCTGTCCTTCTTGAGTCAATCTTTTT
GTACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m11.b1 MSMg01no369_m11.b1 CHROMAT_FILE:
MSMg01no369_m11.b1 PHD_FILE: MSMg01no369_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:36 2005
         (248 letters)



>mm_chr14_115973274_115973921
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagtgtgaaatgcaggatattaagaccttaagaagtgattatttaaatgatttaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggagtgtgaaatgcaggatattaagaccttaagaagtgattatttaaatgatttaattat 389

                                                                       
Query: 61  atcaaatgtttttccactgatgttataattatgttttaatgaaccaatcttaaaataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcaaatgtttttccactgatgttataattatgttttaatgaaccaatcttaaaataaaa 329

                                                                       
Query: 121 acaagtactgtctaaatgtttaacatgaaaaccctatttcatttgtagctcacactagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acaagtactgtctaaatgtttaacatgaaaaccctatttcatttgtagctcacactagtt 269

                                                                       
Query: 181 ttctagttttcaaatgtaatttttgttaagtaatttagactaaattttatgttgttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctagttttcaaatgtaatttttgttaagtaatttagactaaattttatgttgttaaat 209

                   
Query: 241 aaatcagt 248
           ||||||||
Sbjct: 208 aaatcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no369_m11.g1 MSMg01no369_m11.g1 CHROMAT_FILE:
MSMg01no369_m11.g1 PHD_FILE: MSMg01no369_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:36 2005
         (247 letters)



>mm_chr14_115786113_115786759
          Length = 647

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttttcagccacagtgaagcattaaatagattttagaaacattttgttcctaacgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttttcagccacagtgaagcattaaatagattttagaaacattttgttcctaacgctt 260

                                                                       
Query: 61  caaagtcccttagaagaaacatctccttgtatagtaaaatgctttgtttttcacataaga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagtcccttagaagaaaaatctccttgtatagtaaaatgctttgtttttcacataaga 320

                                                                       
Query: 121 agtaaattttaagactttggaaaatggcttttattatttcaaataatttaggggcagaac 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 agtaaattttaagactttggaaaatggcttttattacttcaaataatttaggggcagaac 380

                                                                       
Query: 181 ttaatggaattatactgttactcattctagactctagctaaactgtatgacatgcttttg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatgggattatactgttactcattctagactctagctaaactgtatgacatgcttttg 440

                
Query: 241 aagaa 245
           |||||
Sbjct: 441 aagaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)