BAC Information

Click to search

BAC

Clone NameMSMg01-370E05
Chromosome14 (Build37)
Map Location 117,859,653 - 118,025,724
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370E05.T7 (MSMg01no370_e05.b1)MSMg01-370E05.TJ (MSMg01no370_e05.g1)
ACCAG477052AG477053
length791772
length of high quality
(start - end)		400 (40 - 439)364 (71 - 434)
definitionCHROMAT_FILE: MSMg01no370_e05.b1 PHD_FILE: MSMg01no370_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:15 2005CHROMAT_FILE: MSMg01no370_e05.g1 PHD_FILE: MSMg01no370_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,025,328 - 118,025,724)(117,859,653 - 117,860,016)
sequence
CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAATGGCATAGCAAAACAGGGGGGAAAAGAAAAACTGTAAGAGCTATCTG
ATGGAGCACTGAGACTGAGAAGAGGAGAGAGGAGGGGAGCATTTGAAATG
ACGTTAGCCAGAACTTGCCCCTAATTCTGCTCATCATTGAATATAACCAA
CACACAGGGGAGCTTATATTTTAGTTTTTAAAAATCAACTGATTTTGTTT
GAGACATTACATTTCACATCAAACTGTCAGCTAACAACCAGGTATATTGA
TAGCATAAAGATTTATGTTAGGATAGCCAATGAGCACCAAGGGGAAACAA
TTAAGGAGTAACTATTAAGGGTCTGTGAGATGGCTCAGTGGGTATAGGCA
CTTGCCACCAAGCCTGAGTTAATTCCTGGAAGTCACATGGTATAAGGACA
CTCTCGTGTTTCCTTTGACTGCCATGAGAGGGTCTTGTGCACAATACCTC
CACTAATAACACCTGTATCTATTTTTATAACCACAATTTAATATACTATT
GGTCTTACACATAACCTTCCATACTATTTCTTCCTTTTATCTCCCCCCTG
GCGACCTTTAACAATCCACTCATCAACTATTGCTACTTCCCCCCCCCAAG
CCCAAATGGGTCTCTCCGATTTTCCTATAACCCTCTTTTTTCTCCATCTT
TCTTTCCTACTCCCCTTCTCACCCTGCTCCTCTAATATCTCCTTCCCGTT
AAATTCCTCCCTCTTCCCCATCTTTTCCCCTCTCGCTTACC

AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATAGTCTTGCATTTTGGCAATAATTTTAT
CTCTGTGAAATAGGGCAGCTAATCAAACTCAGACTCCTGCCTAGGCAATG
GTATAGAAATCTGTGTTTCCTGACTTTCGCCAGAAAAACAAGACAAGTTT
ATTGTATGATTTGTTTTCTAATATTTAAGATCTTATTCTTATGAGAAATT
ATAAATATTATATGCTAGCACTATTGACATTCTCACAATAACTCAAGTTA
ATGAAACCTAATAACTTGCTTGTGAGGACAAGGCAAAATAACTGGAACTA
CTGTCAGATGTCAGAATTGCTTTAGCCTTTTTCATAAATCACGGTGGGAG
TATCATTATCATACGTGATTAATGGCACTTCACGTGTTGAATCTGATTAC
TGCTATCCCACCCAGAAAATAATGAGGAAATCACTCATGAAAATCTTACA
TGGAGAGGGTGCCTTTCTCTTCCACCTTACCATTACTTGACTCCTCTCCC
ATTTTGTCCCACCTAACTTCTTGGAATCCTGGCAATATTCTTCAGACCCC
CCGTCTGCAGTTCTTCTCTCTCATAAATATCTGCTAATTTTGTTATCCCC
CTATTATCCCCCCCCTTTCCCCTTTCATTATTTTTCCCCCTTTCCCTCTC
TACTTCTTGTTTCCTACACCCCCCCTCTTCTGATTATTTTTTTACCCTTC
CCTCCTATTTTTCCCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_e05.b1 MSMg01no370_e05.b1 CHROMAT_FILE:
MSMg01no370_e05.b1 PHD_FILE: MSMg01no370_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:15 2005
         (400 letters)



>mm_chr14_118025196_118025995
          Length = 800

 Score =  721 bits (373), Expect = 0.0
 Identities = 391/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttaatggcatagcaaaacaggggggaaaagaaaaactgtaagagctatctgat 63
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 529 ggaattctcaatggcatagcaaaacagggggggaaagaaaaactgtaagagctatctgat 470

                                                                       
Query: 64  ggagcactgagactgagaagaggagagaggaggggagcatttgaaatgacgttagccaga 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 469 ggagcactgagactgagaagaggagagaggaggggagcatttgaaatgacattagccaga 410

                                                                       
Query: 124 acttgcccctaattctgctcatcattgaatataaccaacacacaggggagcttatatttt 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acttgtccctaattctgctcatcattgaatataaccaacacacaggggagcttatatttt 350

                                                                       
Query: 184 agtttttaaaaatcaactgattttgtttgagacattacatttcacatcaaactgtcagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agtttttaaaaatcaactgattttgtttgagacattacatttcacatcaaactgtcagct 290

                                                                       
Query: 244 aacaaccaggtatattgatagcataaagatttatgttaggatagccaatgagcaccaagg 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 289 aacaaccaggtatattgatagcataaagatttatgttagggtagccaatgagcaccaagg 230

                                                                       
Query: 304 ggaaacaattaaggagtaactattaagggtctgtgagatggctcagtgggtataggcact 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 ggaaacaattaaggagtaactattaagggcctgtgagatggctcagtgggtataggcact 170

                                                
Query: 364 tgccaccaagcctgagttaattcctggaagtcacatg 400
           |||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgccaccaagcctgagttaattcctggaagtcacatg 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_e05.g1 MSMg01no370_e05.g1 CHROMAT_FILE:
MSMg01no370_e05.g1 PHD_FILE: MSMg01no370_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:16 2005
         (364 letters)



>mm_chr14_117859453_117860216
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagtcttgcattttggcaataattttatctctgtgaaatagggcagctaatcaaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagtcttgcattttggcaataattttatctctgtgaaatagggcagctaatcaaactc 260

                                                                       
Query: 61  agactcctgcctaggcaatggtatagaaatctgtgtttcctgactttcgccagaaaaaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agactcctgcctaggcaatggtatagaaatctgtgtttcctgactttcgctagaaaaaca 320

                                                                       
Query: 121 agacaagtttattgtatgatttgttttctaatatttaagatcttattcttatgagaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacaagtttattgtatgatttgttttctaatatttaagatcttattcttatgagaaatt 380

                                                                       
Query: 181 ataaatattatatgctagcactattgacattctcacaataactcaagttaatgaaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatattatatgctagcactattgacattctcacaataactcaagttaatgaaaccta 440

                                                                       
Query: 241 ataacttgcttgtgaggacaaggcaaaataactggaactactgtcagatgtcagaattgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacttgcttgtgaggacaaggcaaaataactggaactactgtcagatgtcagaattgc 500

                                                                       
Query: 301 tttagcctttttcataaatcacggtgggagtatcattatcatacgtgattaatggcactt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagccttttccataaatcacggtgggagtatcattatcatacgtgattaatggcactt 560

               
Query: 361 cacg 364
           ||||
Sbjct: 561 cacg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |