BAC Information

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BAC

Clone NameMSMg01-370M09
Chromosome14 (Build37)
Map Location 96,729,161 - 96,863,497
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370M09.T7 (MSMg01no370_m09.b1)MSMg01-370M09.TJ (MSMg01no370_m09.g1)
ACCAG477441AG477442
length774773
length of high quality
(start - end)		365 (136 - 500)416 (73 - 488)
definitionCHROMAT_FILE: MSMg01no370_m09.b1 PHD_FILE: MSMg01no370_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:55 2005CHROMAT_FILE: MSMg01no370_m09.g1 PHD_FILE: MSMg01no370_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,863,133 - 96,863,497)(96,729,161 - 96,729,576)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCACCATACCGCGGAA
TTCCAGNTGTCTTTTCAAAATAACACCTGCTAAATCCTTGCATCATCTGA
TATTCAGGTATCATTGATTTTAGACAAAACTTTTCATGTTCATGGAAATC
TGTGAAAGAGCTGGTTTTATCTGGTTTACATTATCTTCTATATATATTTT
ATTCTTATTCACATAATTAAAAAATATGTACTCCACAGAAAATATTTTTT
TTCTAAATTTTCTACTGTCATTAAGAACTGTGTTTAAAACAATTATTCTT
GTAGAGTGTATTACTAATGATGGATAAATTAAGAAAAAAGATAACTTCTT
TCTCAACGTCAGCTGTTGAAAGAAAACAGAAGCAGTTCTACTTCAATGTT
CCTTTCTATTCAGNTGTTCCTCATCTTTTCCCACTACCTCCAATATCATT
CAAAACTAGGGCACCCTTATCATATGCTATTAAGCTGGAACTGATCATAT
TCTCAAGGTCATCTAAAAGCATTATTCATAACTTCAGTTTAAAAAAAATA
AAAAAAAATCCTTTATAAATGTATTTCAAAATGGTAGTAACTTTTCTGAC
ATAAATTTTAGTTTAATTATGGCCACCCGCTTCCTAATGGGAACAAAACA
AAACTTGGTATGGGGATTATTTGCATAACAACCTTTTAACGGTCTTTTTT
TTTTCCCCTGGTCCTATGGTAAGTAATAATCCTCGCGGGGTTCCTCCCTC
CTCCCTTGTTCACATTTCCCTTTN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTCTTTCTTTAGACATTTCAAAATAT
TGCATGGAAAAATGTGAAAAGAGTTTACTTGACTTGTTTGTGCAGATATG
CTTTCATTCTTAAAACATAGCTATGTTTTAAGGCAAAAAGGTGACTATAA
ATGAACAAAGTCTGCATCATTGGATTTTTTTAAAATTTTCAAATGTTGGA
CAAAAATTAAAAAGTCAGCAAAAATATTTGCTCCTATATTTCTGACATGA
AATAACTCTTAAACATTAATTCCCCTTGGTGTGCAGTCATAAAGTCTGTA
CATGAAATCTCCAGGCACATTAAATATACAAATGCACATGCAGTCATAAA
TGCTATAGACTTCCTGGCTTTAACATATCTGTAAAGCCCATTTCTGCATA
ACAATTAACCAAGCCATGCTGGTTCAGCACCAAATGAGCAGATAAAGTCT
CTATGCTCTGGTTTGTTAAAAATATAAATGATCCTACTGACCAAGGACAA
CGGACTTTTTTTTTTTTTCTAAATAAACCCTGGCCATATAGGAAAAAAAA
TCCACCTTTTGTTTGATAAAAAATACAATCCCCTTGAAAATCAAAACCTT
CCTTTAACCAAAAATAACCTTTTCTCCCCCTAAAAAAAAAAATTCACATT
GTCCCCGGCGGGTAAAAAAGGGCAACCCTCCTCGTGTCTTGTATATTATC
AAACAGCGGTTTTTCGCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_m09.b1 MSMg01no370_m09.b1 CHROMAT_FILE:
MSMg01no370_m09.b1 PHD_FILE: MSMg01no370_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:55 2005
         (365 letters)



>mm_chr14_96862933_96863697
          Length = 765

 Score =  700 bits (362), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttcatggaaatctgtgaaagagctggttttatctggtttacattatcttctatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgttcatggaaatctgtgaaagagctggttttatctggtttacattatcttctatatat 506

                                                                       
Query: 61  attttattcttattcacataattaaaaaatatgtactccacagaaaatattttttttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attttattcttattcacataattaaaaaatatgtactccacagaaaatattttttttcta 446

                                                                       
Query: 121 aattttctactgtcattaagaactgtgtttaaaacaattattcttgtagagtgtattact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattttctactgtcattaagaactgtgtttaaaacaattattcttgtagagtgtattact 386

                                                                       
Query: 181 aatgatggataaattaagaaaaaagataacttctttctcaacgtcagctgttgaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgatggataaattaagaaaaaagataacttctttctcaacgtcagctgttgaaagaaa 326

                                                                       
Query: 241 acagaagcagttctacttcaatgttcctttctattcagntgttcctcatcttttcccact 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 acagaagcagttctacttcaatgttcctttctattcagttgttcctcatcttttcccact 266

                                                                       
Query: 301 acctccaatatcattcaaaactagggcacccttatcatatgctattaagctggaactgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctccaatatcattcaaaactagggcacccttatcatatgctattaagctggaactgat 206

                
Query: 361 catat 365
           |||||
Sbjct: 205 catat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_m09.g1 MSMg01no370_m09.g1 CHROMAT_FILE:
MSMg01no370_m09.g1 PHD_FILE: MSMg01no370_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:55 2005
         (416 letters)



>mm_chr14_96728961_96729776
          Length = 816

 Score =  804 bits (416), Expect = 0.0
 Identities = 416/416 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctttctttagacatttcaaaatattgcatggaaaaatgtgaaaagagtttacttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctttctttagacatttcaaaatattgcatggaaaaatgtgaaaagagtttacttga 260

                                                                       
Query: 61  cttgtttgtgcagatatgctttcattcttaaaacatagctatgttttaaggcaaaaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtttgtgcagatatgctttcattcttaaaacatagctatgttttaaggcaaaaaggt 320

                                                                       
Query: 121 gactataaatgaacaaagtctgcatcattggatttttttaaaattttcaaatgttggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactataaatgaacaaagtctgcatcattggatttttttaaaattttcaaatgttggaca 380

                                                                       
Query: 181 aaaattaaaaagtcagcaaaaatatttgctcctatatttctgacatgaaataactcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaattaaaaagtcagcaaaaatatttgctcctatatttctgacatgaaataactcttaa 440

                                                                       
Query: 241 acattaattccccttggtgtgcagtcataaagtctgtacatgaaatctccaggcacatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattaattccccttggtgtgcagtcataaagtctgtacatgaaatctccaggcacatta 500

                                                                       
Query: 301 aatatacaaatgcacatgcagtcataaatgctatagacttcctggctttaacatatctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatacaaatgcacatgcagtcataaatgctatagacttcctggctttaacatatctgt 560

                                                                   
Query: 361 aaagcccatttctgcataacaattaaccaagccatgctggttcagcaccaaatgag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagcccatttctgcataacaattaaccaagccatgctggttcagcaccaaatgag 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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