BAC Information

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BAC

Clone NameMSMg01-371E03
Chromosome14 (Build37)
Map Location 109,329,822 - 109,330,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371E03.T7 (MSMg01no371_e03.b1)MSMg01-371E03.TJ (MSMg01no371_e03.g1)
ACCAG477810AG477811
length748765
length of high quality
(start - end)
529 (74 - 602)563 (44 - 606)
definitionCHROMAT_FILE: MSMg01no371_e03.b1 PHD_FILE: MSMg01no371_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:37 2005CHROMAT_FILE: MSMg01no371_e03.g1 PHD_FILE: MSMg01no371_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTACCCCATTATTT
AATGGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATA
TATTGGATATTATTCCCCTATTAGACTTAGGATTGGTAAAAATCTTTTCC
CAGTCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACA
GAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAA
CACAAGCCATTGCTGTTCAGTTCATGAATTTTTCCCGTGCCCATATTTTT
GAGGCTTTTTCCCACGTTCTCCTCTATATATTTCAATGTCTCTGGTTTTA
TGTGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAGG
AAAGGATCAATTCACATTCTACTACATGGTAACCACCACTTATGCCAGCA
TCATTTGTTGAAAATGAAAATGCTGTTTTTTATCCACTGGATGGTTTTAG
ATTCCTTGTCAAAGATCAAGTGACCATAGGTGTTTGGGTTCATTTTTGGA
TCTTCAATTCTATTCCATAGATCTACTTGTCCGTTGGTGTACCAGTACCG
CGAAGTTTTTTATACAATTGCTCTGTAAAGTTTGAGGTCCTGCCATGGTG
ATTTTAGCAAAGGCTCCTTCATTAGTTGAAATAAATCTTGTTATTCTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAGCAGACTTGCTAAAATTCCACCTATCTCCCAGGAAATACGTCTC
TTCCCTTTGGCATTGTTACACATTAACTGGGTCTTCCCAGTGGATCTATT
AGCGAAAGAAAATAATTGTTGCAATTCGGTACCCAGGAAGAGTAAACATA
CTTCTAATGCACTTTTAAAATTTCCCATGTGTGTATATCAAATATGATAA
TGTGGAAGAGATGCTATAGTCAAACATGCCATAGAATGGGAGCCACGGTG
GCTGAATTTTCAATCTCTTGCACAATGGGACTGTGTTGTGTTTATCTTTG
TATTTCCCATATCTGGCAGAGGGACTGGCACCGTGCAGCTGCATAGAATT
AAACAATTAATTAATAGCACGTTTGGTTCCAAAACGGATTTGAGGTAGTT
TATAGGACATACATACAATAAGATAACAAAATATCAGGAAAGTCTAAACA
CACTTTAAGAGAAAAAAATTGGAAAATATCATTTGCACCCACTATGCAGG
CGTGAGGTCCTTAGTGGCATATTCTTGTGTTTACATTACTGCCCTTGAGC
TACAGAANAGCTTCAGTTTCTGCAACAGAATAAAAAATAACATTTTGCTG
TTTTACTGAGTATGCTTATGTCCAACTTATATTTGATATTTGCAAAACTA
CTTGCAGCTTGTCAAAATCATAAAATTACTGGTTAGGNNTGTTTGTTTGG
TTGTTTAATTTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_e03.g1 MSMg01no371_e03.g1 CHROMAT_FILE:
MSMg01no371_e03.g1 PHD_FILE: MSMg01no371_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:37 2005
         (563 letters)



>mm_chr14_109329618_109330580
          Length = 963

 Score = 1058 bits (547), Expect = 0.0
 Identities = 556/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagcagacttgctaaaattccacctatctcccaggaaatacgtctcttccctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagcagacttgctaaaattccacctatctcccaggaaatacgtctcttccctt 264

                                                                       
Query: 65  tggcattgttacacattaactgggtcttcccagtggatctattagcgaaagaaaataatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggcattgttacacattaactgggtcttcccagtggatctattagcgaaagaaaataatt 324

                                                                       
Query: 125 gttgcaattcggtacccaggaagagtaaacatacttctaatgcacttttaaaatttccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgcaattcggtacccaggaagagtaaacatacttctaatgcacttttaaaatttccca 384

                                                                       
Query: 185 tgtgtgtatatcaaatatgataatgtggaagagatgctatagtcaaacatgccatagaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgtgtatatcaaatatgataatgtggaagagatgctatagtcaaacatgccatagaat 444

                                                                       
Query: 245 gggagccacggtggctgaattttcaatctcttgcacaatgggactgtgttgtgtttatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggagccacggtggctgaattttcaatctcttgcacaatgggactgtgttgtgtttatct 504

                                                                       
Query: 305 ttgtatttcccatatctggcagagggactggcaccgtgcagctgcatagaattaaacaat 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 ttgtatttcccatatctggcaaagggactggcaccgtgcagctgcatagaattaagcaat 564

                                                                       
Query: 365 taattaatagcacgtttggttccaaaacggatttgaggtagtttataggacatacataca 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 taattaatagcacgtttggttccaaaacggatttgaggtagtttatgggacatacataca 624

                                                                       
Query: 425 ataagataacaaaatatcaggaaagtctaaacacactttaagagaaaaaaattggaaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataagataacaaaatatcaggaaagtctaaacacactttaagagaaaaaaattggaaaat 684

                                                                       
Query: 485 atcatttgcacccactatgcaggcgtgaggtccttagtggcatattcttgtgtttacatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcatttgcacccactatgcaggcgtgaggtccttagtggcatattcttgtgtttacatt 744

                              
Query: 545 actgcccttgagctacaga 563
           |||||||||||||||||||
Sbjct: 745 actgcccttgagctacaga 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)