BAC Information

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BAC

Clone NameMSMg01-372E22
Chromosome14 (Build37)
Map Location 96,947,871 - 96,948,230
singlet/doubletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372E22.T7 (MSMg01no372_e22.b1)MSMg01-372E22.TJ (MSMg01no372_e22.g1)
ACCAG478601AG478602
length783784
length of high quality
(start - end)		533 (37 - 569)443 (67 - 509)
definitionCHROMAT_FILE: MSMg01no372_e22.b1 PHD_FILE: MSMg01no372_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:01 2005CHROMAT_FILE: MSMg01no372_e22.g1 PHD_FILE: MSMg01no372_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGA
GAGCCCCGAAAGTGAATAGAAATCTGCAGCTGCCTGCAGTGAGAGGGAGG
GGAGAATCTCTAGGAAGTCCCAGAGACCTGAAATGAGCAAGGTTTCCAGG
AGGAAATTCAGGTAACTTTAGACCAAATGCCTATAAGGTTCTTCAAGGAA
CCTGAAGAAGACACCTCCTGTAACCAGCCAAGACACCCCAATGGAGGGAT
AGGATTATAATATACCACCCACAAAACTTTTAACCCAAAATATGTCCTGT
CTAAAAGAAATTCAGTAACAAAGACAGAGCAGAGACTGAGGAAATGGGCA
ACCAATAACTGGTACCACTTGAAAACCATTTCATGGGCAAGTACCAATCC
TTGACATTATTAATGATACTCTGTTATGCTTGCAGAGAGCCTAGCATAAC
TGTTCTCTGAGAGGCTCTACCCAGCAGCTGACTGAAACAGATTTCGATAC
CTACAGGCAAACATTAGAAAGAGGCTGGGGACACTTACAGAAGAGTTAGG
GGAAGCATGTTGGTAGGCGATTTCTAGGCCATGTAAGCAAATTACCAAAA
TCATCTAAAATTAGAGAGAGCGAATAAGTATTCCTTGTGGACCAATACAT
GAGAGTAACTTAATAAAAAGTTTTCCTAATTGAGGAAAAAGATCAAAAAT
TTTGAATGGAAAAAAGGGACCTATTTTTGATTTATTGAAGAAGAACAAAA
AAATTTCGTGGGGTGCAGCCCCAACATTGAGTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTTGTTGTTTTTCTTTCCCTATCTCATGGTCA
GAGAGCTTCCTTTCTACAACACTTAAAGCACCTTCCCAGAGATGGCCTGA
GCCAGACTGGGATGGGCTCCTTCCATATCAATCAGCAGCAAAGACAATGC
CCTACAGATATAATTACAGGCCAAACTGATTGGGCATTCTGATCTGGGGG
TTACCCTTTCTTGCTGACTCTAGGTTCTGTCAAATTGACAATCATCATGA
ACATCATCATCATCATCCTTCTCATCCTTCTAATCAGTACAATCATGATT
TTAGGAAAGAAATAAGATTTTAATATTTGGATTTAAAAAAGGTGTCATTG
AAAAATATTCTGCATATAGGAAGTTTGGGAAGCTTTTGAGTAGAAAGGAA
GAAAATAAAATTAGCAGGCACACTTTAAAATTAGAAAAAAAACATAATTA
AATACTGAGTATAATTAATTAGGTCAATGGCAAGCCAAGTCTAGACTGAG
AGATACAATTTGACNAAACCGAAGACTAAGCTGCTTAACAAAGAAGCAAG
TCATAATGTTCTTTGACAGAGAAGAATAAAGAAGGAGGGCTAAAAAAAAT
CTAATTTTCCAAGGCCCCTGAGGCCCACTCCCTTTTTTGAATTCCCTTCC
GGCCCCCCTGGACGGAACGGGAAAAAAAAATTTGGCTTTACTTTTTCCAA
AAGGCCCGGGGGGCCCGGGATTTACCTATAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_e22.g1 MSMg01no372_e22.g1 CHROMAT_FILE:
MSMg01no372_e22.g1 PHD_FILE: MSMg01no372_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:01 2005
         (443 letters)



>mm_chr14_96947388_96948230
          Length = 843

 Score =  696 bits (360), Expect = 0.0
 Identities = 360/360 (100%)
 Strand = Plus / Minus

                                                                       
Query: 84  agccagactgggatgggctccttccatatcaatcagcagcaaagacaatgccctacagat 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 agccagactgggatgggctccttccatatcaatcagcagcaaagacaatgccctacagat 784

                                                                       
Query: 144 ataattacaggccaaactgattgggcattctgatctgggggttaccctttcttgctgact 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ataattacaggccaaactgattgggcattctgatctgggggttaccctttcttgctgact 724

                                                                       
Query: 204 ctaggttctgtcaaattgacaatcatcatgaacatcatcatcatcatccttctcatcctt 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctaggttctgtcaaattgacaatcatcatgaacatcatcatcatcatccttctcatcctt 664

                                                                       
Query: 264 ctaatcagtacaatcatgattttaggaaagaaataagattttaatatttggatttaaaaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctaatcagtacaatcatgattttaggaaagaaataagattttaatatttggatttaaaaa 604

                                                                       
Query: 324 aggtgtcattgaaaaatattctgcatataggaagtttgggaagcttttgagtagaaagga 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aggtgtcattgaaaaatattctgcatataggaagtttgggaagcttttgagtagaaagga 544

                                                                       
Query: 384 agaaaataaaattagcaggcacactttaaaattagaaaaaaaacataattaaatactgag 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agaaaataaaattagcaggcacactttaaaattagaaaaaaaacataattaaatactgag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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