BAC Information

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BAC

Clone NameMSMg01-373M09
Chromosome14 (Build37)
Map Location 78,747,572 - 78,916,611
singlet/doubletdoublet
Overlap geneLOC219180, Akap11
Upstream geneD230005D02Rik, EG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
Downstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M09.T7 (MSMg01no373_m09.b1)MSMg01-373M09.TJ (MSMg01no373_m09.g1)
ACCAG479724AG479725
length722718
length of high quality
(start - end)		596 (17 - 612)539 (56 - 594)
definitionCHROMAT_FILE: MSMg01no373_m09.b1 PHD_FILE: MSMg01no373_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:48 2005CHROMAT_FILE: MSMg01no373_m09.g1 PHD_FILE: MSMg01no373_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,747,572 - 78,748,138)(78,916,073 - 78,916,611)
sequence
CGACTCCTATTTCGAGAGGATCCGCGGAATTCTTTTTGTTACGTCCCAAA
CTGACAAGAGCCAGCAAACTGGACAGGGATGCCAGTGGTCTACATTCTTT
ACATACTCGGAATCAGCAACACCAGGAAAAACCAGGTCAGAAAACACTAA
GGCCATGGTTATGAGACAATCTGGAAAATCCTGAGAGTTCCACTAGAGTA
CACCTCACAAACCACATGCCGATCCTAGGCAATGAAACTCTAGCCATGTG
GTGGTGCTTGCAATAGACCAGAGGATATTGGACACAGGAGTCTCAGAGTC
TTTCCATGATTCCACCAGAAGCCAATGTGGATGATGTAAGCAAACTCAAT
AGGTGCACACCATGCTGATTGCAAAGCTAAAATAAGAACAGCCAATGGAA
AGAGGAGAGAAACATTGATTACCCACAGCAGGGCAGGACAGCACAGTAGC
TGTTTTGAGAGAAACACTCCCCTTAAACCAAGGGAGTGAGGTGATTTGAT
TCTGGGGATCTCTGCATATTCATCTATGANAGCACTTTGAGTATAGCAGT
GCATTCCTGTTCTGTTTAAGATCATAGTGTAAGAAGGAAAGACTGTAGAT
AGATGTTTGTGTTTGGTCAACTCAAGGCCTTGGAGCACAAGTTCAAAAGG
TGAACACTGGACTGCAATGGAGAAGTGGCTTCTTTGAGAGAGTGCTTGCT
TAGCATACCTGAGGTCGGGGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGC
ATAAAATTCTATATGAAAAACTCCAGCATCAACCCAGAAGACCTGAGGGT
GACAACTACTAAAAGTATTTAAATGCTGATCATTATGGGTGTGTGAGGTG
TCCTGTTTTAAGATTGATGAGGTAGCAAAATGCTCGAAAGGCTACAATAC
AAAGCATTACTAAGTAACCTGTGCTTTATTTGTGATTTAAAAAATGACTC
TGTAGATAAACTGTGTATGTATGTGAGCTGTTACAAAGCAGACAATTTAT
TGTTCTGNACTTTTCATGAGTTTTGAGTGGACAACATTGTGGAAACCTTG
ACATTGCTATTCTGTAATATTGTTCATTACTGTCACTGTTATTTAAAATT
AGGATCTAGCTGCAGTTTCACTGGAACTTCCAGATCTTCTGAATTCGCTC
CATTTCTGCAGTCTAAGTGAAAATGAAATCATTTGTATGAAGGATACCAG
TAAATCGTCCAATGTAAGCAGTAGTCCTCTAAATCAGGTAACTGGTAGAT
CATTTCTCATCTGCTTTTTCAGGNCAGGTTTTTAGTATATTTGCTCAGTA
ATAGTGATCGAAGCTTTTCTTGATTTAAATTAGCCTCCTTTAATTGGTAT
TGATGAAAAGTCTAACTCCCAAAGCATTGCCAGCCTTGAAGTATAAAATA
ATTTTGATCATGGTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m09.b1 MSMg01no373_m09.b1 CHROMAT_FILE:
MSMg01no373_m09.b1 PHD_FILE: MSMg01no373_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:48 2005
         (596 letters)



>mm_chr14_78747343_78748338
          Length = 996

 Score = 1052 bits (544), Expect = 0.0
 Identities = 561/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 30  ccaaactgacaagagccagcaaactggacagggatgccagtggtctacattctttacata 89
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 230 ccaaactgacaagagccagcaaactggacagggatgccagtggtctacattccttacata 289

                                                                       
Query: 90  ctcggaatcagcaacaccaggaaaaaccaggtcagaaaacactaaggccatggttatgag 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctcggaatcagcaacaccaggaaaaaccaggtcagaaaacactaaggccatggttatgag 349

                                                                       
Query: 150 acaatctggaaaatcctgagagttccactagagtacacctcacaaaccacatgccgatcc 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acaatctggaaaatcctgagagttccactagagtacacctcacaaaccacatgccgatcc 409

                                                                       
Query: 210 taggcaatgaaactctagccatgtggtggtgcttgcaatagaccagaggatattggacac 269
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 410 taggcaatgaaactctagccatgtggtggtgcttacaatagaccagaggatattggacac 469

                                                                       
Query: 270 aggagtctcagagtctttccatgattccaccagaagccaatgtggatgatgtaagcaaac 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aggagtctcagagtctttccatgattccaccagaagccaatgtggatgatgtaagcaaac 529

                                                                       
Query: 330 tcaataggtgcacaccatgctgattgcaaagctaaaataagaacagccaatggaaagagg 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcaataggtgcacaccatgctgattgcaaagctaaaataagaacagccaatggaaagagg 589

                                                                       
Query: 390 agagaaacattgattacccacagcagggcaggacagcacagtagctgttttgagagaaac 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agagaaacattgattacccacagcagggcaggacagcacagtagctgttttgagagaaac 649

                                                                       
Query: 450 actccccttaaaccaagggagtgaggtgatttgattctggggatctctgcatattcatct 509
           |||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct: 650 actccccttaaaccaaggaagtgaggtgatttgattctgggaacctctgcatattcatct 709

                                                                       
Query: 510 atganagcactttgagtatagcagtgcattcctgttctgtttaagatcatagtgtaagaa 569
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atgaaagcactttgagtatagcagtgcattcctgttctgtttaagatcatagtgtaagaa 769

                                      
Query: 570 ggaaagactgtagatagatgtttgtgt 596
           |||||||||||||||||||||||||||
Sbjct: 770 ggaaagactgtagatagatgtttgtgt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_m09.g1 MSMg01no373_m09.g1 CHROMAT_FILE:
MSMg01no373_m09.g1 PHD_FILE: MSMg01no373_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:48 2005
         (539 letters)



>mm_chr14_78915873_78916811
          Length = 939

 Score =  961 bits (497), Expect = 0.0
 Identities = 528/539 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctatatgaaaaactccagcatcaacccagaagacctgagggtgacaactactaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 attctatatgaaaaactccagcatcaacccagaagacctgagggtgacaactactaaaag 680

                                                                       
Query: 61  tatttaaatgctgatcattatgggtgtgtgaggtgtcctgttttaagattgatgaggtag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catttaaatgctgatcattatgggtgtgtgaggtgtcctgttttaagattgatgaggtag 620

                                                                       
Query: 121 caaaatgctcgaaaggctacaatacaaagcattactaagtaacctgtgctttatttgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caaaatgctcgaaaggctacaatacaaagcattactaagtaacctgtgctttatttgtga 560

                                                                       
Query: 181 tttaaaaaatgactctgtagataaactgtgtatgtatgtgagctgttacaaagcagacaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttaaaaaatgactctgtagataaactgtgtatgtatgtgagctgttacaaagcagacaa 500

                                                                       
Query: 241 tttattgttctgnacttttcatgagttttgagtggacaacattgtggaaaccttgacatt 300
           |||||||  | | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttattgaccagtacatttcatgagttttgagtggacaacattgtggaaaccttgacatt 440

                                                                       
Query: 301 gctattctgtaatattgttcattactgtcactgttatttaaaattaggatctagctgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctattctgtaatattgttcattactgtcactgttatttaaaattaggatctagctgcag 380

                                                                       
Query: 361 tttcactggaacttccagatcttctgaattcgctccatttctgcagtctaagtgaaaatg 420
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 tttcattggaacttccagatcttctgaattcgctccatttttgcagtctaagtgaaaatg 320

                                                                       
Query: 421 aaatcatttgtatgaaggataccagtaaatcgtccaatgtaagcagtagtcctctaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaatcatttgtatgaaggataccagtaaatcgtccaatgtaagcagtagtcctctaaatc 260

                                                                      
Query: 481 aggtaactggtagatcatttctcatctgctttttcaggncaggtttttagtatatttgc 539
           ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 aggtaactggtggatcatttctcatctgctttttcagggcaggtttttagtatatttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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