BAC Information

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BAC

Clone NameMSMg01-374E07
Chromosome14 (Build37)
Map Location 21,338,881 - 21,339,339
singlet/doubletsinglet
Overlap genePpp3cb
Upstream geneEG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17
Downstream geneUsp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374E07.T7 (MSMg01no374_e07.b1)MSMg01-374E07.TJ (MSMg01no374_e07.g1)
ACCAG480104AG480105
length778768
length of high quality
(start - end)		616 (41 - 656)461 (65 - 525)
definitionCHROMAT_FILE: MSMg01no374_e07.b1 PHD_FILE: MSMg01no374_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:27 2005CHROMAT_FILE: MSMg01no374_e07.g1 PHD_FILE: MSMg01no374_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCCTCTACTTGTCTATTACCAAGGGGACTGAGAACCCTGTTTACACAAG
AACCTCCACATGTGTGTTCATAGAGGCACTGTCAGAAAAAGACCTAAAGT
GGAAACTCAGGTGTCCATCAGCTAATGGAGAAACACAGTGTTACATATGC
ATGTGTTATAGGGTAAATTGTGTGCCCTCTAAAGGTCCCCTGTTGACACT
CTAGCCCTCAGTGTGCTTTTAGGGTATCTAGTGAGGTACTTGAGGCTAAG
TGAGGCCGTGGGATAGCAGCACTATAAGTCAGTAGGCTGGTGTCCTTATA
AGAAAATGAAGAGACACCAGAGATCTCTTTCTCTTTCCACACATGCACAG
AGAAGAGGCCGAATGAGAACACAGCAAGCAGGTGGCCATCTGCAAGCCAG
AAAGAAGCCATAAGAGAGCCCAGCCCTGATGGCAGCTTGATCTTGGACCC
CAGAACTGTGAGAAAATAAGTGTCTATTGTGTATGCCACGCAGCCTGTGA
TCTTGTTAAAGCAACCCTGAGAGACTAGTACACCACACAGCAGAACATTA
TTCATCCATAANAAGGAATTGAGTACCCATCCATTATTACAACATGGGTG
AGCCTTGAAAATCTACCAAATGAAAGGAGACAGACAGTCACATATATTAT
TAATGTATTGTTTAACTCCTGTAAGACTTTCCGAGCAGACTAAAGCACCG
ACCTTAAGGTGCAGGAGATGGAATAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGACAATTCCCCTATAGCAAAAAATATTTTGTTTCT
GTTTTTGTTTTAAAGAAATGATGCTTTCTGACATGTTGAGAAATAACCAT
TAGAAATTTTACCTTTGAGAAGTAATCATTGGGCTTTTAAAGAGATAACA
AATGCTGTTTAAGAATTTTTTTCCTAGTTGTATAGAATTCTTAGGATTTT
GTTGCCCTTTTCACAATAGTGTTCACTCTTTTTTTCTTCCTCCCTTTTTT
TCTTTCTAAACAGGGCAGTTCATCAGATTGTGTCAAATTGATAGTGTGAG
AATACAGATAGACTTACAAAACCATTTGTTCTATATCCCCTCTATTTTTT
CACACCTCTTCCATGTTACAAAATATGTCAACTCTGCCAGGGCAATTTTG
GGTTCTAAAATTCAGAGTTAATAATTATATTGTATGTGTGCATGTATGTA
TGTATGCTATGTTATGAGTTTCAGTAGATGGNCTTTACTCATTTACTCAG
TAGGGCTGATGTTAAGTTTATATGGAGATAGAATTACCTATGTTAGCATT
TGAGAAGAGGACAGGTAAGGGGCTTAGGTGAAAGGGATGCAATACACTTA
TAACCTTCCATCTTTAAGGGATGAAGAATAGGTTCATCCTACCATCTTCT
AGCAAAGGGAATTTAAAAATTTTCCTTGGCCCCGGGGGGGTCCCAGGGCA
AATGGAAACCACTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_e07.g1 MSMg01no374_e07.g1 CHROMAT_FILE:
MSMg01no374_e07.g1 PHD_FILE: MSMg01no374_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:27 2005
         (461 letters)



>mm_chr14_21338479_21339339
          Length = 861

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   acaattcccctatagcaaaaaatattttgtttctgtttttgttttaaagaaatgatgctt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acaattcccctatagcaaaaaatattttgtttctgtttttgttttaaagaaatgatgctt 802

                                                                       
Query: 63  tctgacatgttgagaaataaccattagaaattttacctttgagaagtaatcattgggctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgacatgttgagaaataaccattagaaattttacctttgagaagtaatcattgggctt 742

                                                                       
Query: 123 ttaaagagataacaaatgctgtttaagaatttttttcctagttgtatagaattcttagga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaagagataacaaatgctgtttaagaatttttttcctagttgtatagaattcttagga 682

                                                                       
Query: 183 ttttgttgcccttttcacaatagtgttcactctttttttcttcctccctttttttctttc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgttgcccttttcacaatagtgttcactctttttttcttcctccctttttttctttc 622

                                                                       
Query: 243 taaacagggcagttcatcagattgtgtcaaattgatagtgtgagaatacagatagactta 302
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaatagggcagttcatcagattgtgtcaaattgatagtgtgagaatacagatagactta 562

                                                                       
Query: 303 caaaaccatttgttctatatcccctctattttttcacacctcttccatgttacaaaatat 362
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaaccatttgctctatatcccctctattttttcacacctcttccatgttacaaaatat 502

                                                                       
Query: 363 gtcaactctgccagggcaattttgggttctaaaattcagagttaataattatattgtatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaactctgccagggcaattttgggttctaaaattcagagttaataattatattgtatg 442

                                                  
Query: 423 tgtgcatgtatgtatgtatgctatgttatgagtttcagt 461
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcatgtatgtatgtatgctatgttatgagtttcagt 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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