BAC Information

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BAC

Clone NameMSMg01-374E20
Chromosome14 (Build37)
Map Location 104,078,073 - 104,078,496
singlet/doubletsinglet
Overlap geneSlain1
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448
Downstream geneEdnrb, Pou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374E20.T7 (MSMg01no374_e20.b1)MSMg01-374E20.TJ (MSMg01no374_e20.g1)
ACCAG480130AG480131
length788765
length of high quality
(start - end)
429 (48 - 476)418 (56 - 473)
definitionCHROMAT_FILE: MSMg01no374_e20.b1 PHD_FILE: MSMg01no374_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:30 2005CHROMAT_FILE: MSMg01no374_e20.g1 PHD_FILE: MSMg01no374_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCATGATAATTCCTCTGCCTCAGCCTCTCAAGTTCTTGGATTA
TAAAATCTTGACTCCAAATATCCATTTTTAAAAAAGATTTATTTATTTTA
TTTATATGAGTACACTGTAGCTGTCTTCAGGCACACCAGAAGAGGGCATT
GATCCCATTACAGATGGCTGTGAGCCACCATATGGTTGCTGGGAATTGAA
CTCAGGACCTTTGGAAGAGCAGTCAGTTCTCTTAACCACTGAGCCATCTC
TCCAGCCCTCCAAATATCCATTCTTAATTAGCCGTCCCTTTAATCCCTTG
TCTTTTTGTCTATGTCTTTCCCCTTCATCTAGCACCTGTTTGTTGTACTT
TTCTGTGTCTGTCTGCTGTCCACTCCTGAATGCTAAGTCTGTACTCGGAG
CCTGTCCTGCACCATCTCAGCTGAGCTCAGCTTTGGTTTTGGCATGTGCG
TCTTGTGTTCTATGTTTGAGTGGGTGGTGTGACTGTGTTCCCCTTTCTCC
CTCGCATGTTCCCCGGTTGGGAAATGGTTCCACCTCCTCCCGCTGGTAAC
TAATTGGGCCCTCTGACCAAATGTTCCAACTTGGTTTTAATGGGACATGG
TCCTCCTTAAACCGGCGGGAAACTCCCCCAGTGGTCTTCCGGCATCAATC
GGTTGTTTTTTCCTTATTTCCGCGTTTTCCTCAAAATCAACCATATTTTC
CCTCCTTTCTTTAATCCAAATCTGATACATTTTTATCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGGGAGCGCGGCCTGAGTCACTCTGCTGAGCTGCCACGGGGCCA
TGTCTCATTCATAGGCCGCTAACAAGAGTGTTGGCGATGCACGTCAGCAT
GAGTTACTTTTATAATCTGTGACCAAACACATGACAAGAAGCATGCACAG
CTGTACCCTGGCTCCTGGTTTGAGGTATAAGGTCCATAATGGCAATTAAG
GCATGGTGGCAGGTGGTCCCTGGTAGTGGGAACAGGAGGATGCCTCCTTG
GAAGATCCCAGTAGATCAGGAAGTAGTGGCTCAGGTCAGAATAGGCCTGA
CTATAAACCATTAAACCTATTCCCGGTGACCCATTTAATTCAGCAAGGAC
TCAAATAGGAGCTCCAAAAATAGTACCTCCAACTGAAGATGTGTCTAAAT
CTCAGATATCAACTTGTATTTGTAAATCACACTGATCTTCCACAAGTGTA
ACCAGAAAATGGAATACCGAAAAAATACTTTTCCCCAAAAAATAGGGTAG
GGGGGTGTCCAAACTTCCTGCCCTCCTTTTGTAAGGACCCGGTGTGCCCC
CTGTCCCCCCCCTCGCGAAATTGTTTTATATTATCAATTGTCTTTTCTCC
CTTTCTTGTTCCTTCTTTCTTATCTATTCCCCAACAATCTGTCTCTTTCT
TTTATCCTACTTTCCTTTCCCTCCCTTTTATCTTCCTTTCTCTTTATTTT
CCATCCTATATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_e20.b1 MSMg01no374_e20.b1 CHROMAT_FILE:
MSMg01no374_e20.b1 PHD_FILE: MSMg01no374_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:30 2005
         (429 letters)



>mm_chr14_104077868_104078696
          Length = 829

 Score =  812 bits (420), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcatgataattcctctgcctcagcctctcaagttcttggattataaaatcttgac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcatgataattcctctgcctcagcctctcaagttcttggattataaaatcttgac 265

                                                                       
Query: 66  tccaaatatccatttttaaaaaagatttatttattttatttatatgagtacactgtagct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tccaaatatccatttttaaaaaagatttatttattttatttatatgagtacactgtagct 325

                                                                       
Query: 126 gtcttcaggcacaccagaagagggcattgatcccattacagatggctgtgagccaccata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtcttcaggcacaccagaagagggcattgatcccattacagatggctgtgagccaccata 385

                                                                       
Query: 186 tggttgctgggaattgaactcaggacctttggaagagcagtcagttctcttaaccactga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggttgctgggaattgaactcaggacctttggaagagcagtcagttctcttaaccactga 445

                                                                       
Query: 246 gccatctctccagccctccaaatatccattcttaattagccgtccctttaatcccttgtc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccatctctccagccctccaaatatccattcttaattagccgtccctttaatcccttgtc 505

                                                                       
Query: 306 tttttgtctatgtctttccccttcatctagcacctgtttgttgtacttttctgtgtctgt 365
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 tttttgtctatgtctttccccttcatctagcacctgtttgctgtacttttctgtgtctgt 565

                                                                       
Query: 366 ctgctgtccactcctgaatgctaagtctgtactcggagcctgtcctgcaccatctcagct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgctgtccactcctgaatgctaagtctgtactcggagcctgtcctgcaccatctcagct 625

               
Query: 426 gagc 429
           ||||
Sbjct: 626 gagc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)