BAC Information

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BAC

Clone NameMSMg01-374L23
Chromosome14 (Build37)
Map Location 105,004,232 - 105,004,614
singlet/doubletsinglet
Overlap genenone
Upstream geneScel, LOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
Downstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L23.T7 (MSMg01no374_l23.b1)MSMg01-374L23.TJ (MSMg01no374_l23.g1)
ACCAG480468AG480469
length789756
length of high quality
(start - end)
87 (374 - 460)383 (57 - 439)
definitionCHROMAT_FILE: MSMg01no374_l23.b1 PHD_FILE: MSMg01no374_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:05 2005CHROMAT_FILE: MSMg01no374_l23.g1 PHD_FILE: MSMg01no374_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAGGACAGTATTTGGGTGTCTAACTGAGGCATAAATTTATTCCAATGAT
CCGCGTCATACCTGATTTTTCAAGATGTCTATGTTGCATGCCTGTTCAGG
CCGAAGATGTCCAGAGACTGTACTAAATTGAATGCGAACTCTGAATTTAA
TGACAATGATTACCATAGATATTGGGACCAGTATTACAAACAAAGTAATC
CTTGATCTTAGTTATAAATCCATTAAGACTTGCCTTTCATATTTATACCA
AATGATAATAGGACATTTATGAAAGGATGAGGAAATGAAATCTTTGTTTT
TGGTAATAGGTGGAGCAGCGCATATCTGTCTGTCTGTGATTTGCTAAGGC
TACCAACGCAGTGCTGAGGGCAGTGCTCCCTGCTCACTTGCCAAACAACA
AAGAAAACCCAGTGGTCCCCATTCTCAACCCTTTCTTCCCAATGACCTTG
ACTTTGATATGTAGAGCCAAGCATCAGCAACAGCAATGCCTTAATCTGGT
TTTAGCAGCCTAATCAAGTCATGCATTCTTCCTGCCTGGAAAACCTACAG
CTTCCCACACACCTCCGTCTTTAAATATAAAGTGGGCCCATTGTATTGAA
ATTAAAAACCCTTGATGGATTTTTGAAATTCCTGACAAAATTTTTGGTAT
CCTTTTACCAAAAATACCCTGATTTTTAAAAATAAAAACCCTGCTTAAAT
CACCCCTCCTCCATTTTTTTCTGACCTTTCTCCTTTTTATACCCCTTTTT
ACCTTTTTTGTTCCCTCTTTATAAAAAAAATCTCCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGAAGTATTAGGTCTGATTTCTATAATGTTCAGTTCTTTGTCTC
AAAGAAATTCTTGTGATAAATCATGTGTAGGCTTGTATAGCTTTTCCTTG
GTCTTCCTCAAGGCATATGGGGGTGAGGAAGGCTTAGATTGTAGGTAAAT
TTTCTGTAAGTAATTTTTAGATTATTACTAAAGGCATTACCACAATTTAT
AGCCATGCTTCTAGTTTAAGAAGTTAAAAACATCAAAGGTTAAGTTGGTG
AGATAGATATATATTAAAATAGTACTTGGCAGCTGTCAGCAAAGTTGCTG
GGAGCAATTCAATGAGGTATTGAATGATCGGCCTTGTAATTTTTGGCTAT
TTTTCTGTGCATGAGAATCTGGCCTTGTCAAGTTGTACCATCAGCATATG
TTTGAATCAAACCACCTCTTCTAGTCCTCATACTAGCAAGAAATAAGTTT
CCCAAGCAAGTTTGAAATTTGTTGGCAAGGCCAGTGGAAAAATCCTTCCG
CCCTTGCTTAAATTCCGCCCCCTTTTGGGGAAAAATAAAACCCCTGGCCT
TCTGGGTTGGCGGGGCCGCCCCTTTTGAGGAGACTCTATAAAAGGAGGGG
TTTCCCCCCCTTTTCTTTCGTTGAGGCGGGAAGCCCACACTAACTATAAT
TGGCTAATTGGGGGCGCCTACAATACAACCCCCAAACGGGGCTTTGCGTA
ATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l23.g1 MSMg01no374_l23.g1 CHROMAT_FILE:
MSMg01no374_l23.g1 PHD_FILE: MSMg01no374_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:05 2005
         (383 letters)



>mm_chr14_105004032_105004814
          Length = 783

 Score =  671 bits (347), Expect = 0.0
 Identities = 374/383 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtattaggtctgatttctataatgttcagttctttgtctcaaagaaattcttgtga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 agaagtattaggtctgatttctataatgttcagttctttgtctcaaagaaattcttgtaa 260

                                                                       
Query: 61  taaatcatgtgtaggcttgtatagcttttccttggtcttcctcaaggcatatgggggtga 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 taaatcttgtgtaggcttgtatagcttttccttggtcttcctcaaggcatacgggggtga 320

                                                                       
Query: 121 ggaaggcttagattgtaggtaaattttctgtaagtaatttttagattattactaaaggca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaggcttagatcgtaggtaaattttctgtaagtaatttttagattattactaaaggca 380

                                                                       
Query: 181 ttaccacaatttatagccatgcttctagtttaagaagttaaaaacatcaaaggttaagtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttaccacaatttatagccatgcttctagtttaagaagttaaaaacatcaaagtttaagtt 440

                                                                       
Query: 241 ggtgagatagatatatattaaaatagtacttggcagctgtcagcaaagttgctgggagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgagatagatatatattaaaatagtacttggcagctgtcagcaaagttgctgggagca 500

                                                                       
Query: 301 attcaatgaggtattgaatgatcggccttgtaatttttggctatttttctgtgcatgaga 360
           ||||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||||
Sbjct: 501 attcaatgaggcattgaatgatcaaccttataatttttggctatttttctgtgcatgaga 560

                                  
Query: 361 atctggccttgtcaagttgtacc 383
           |||||||||||||||||||||||
Sbjct: 561 atctggccttgtcaagttgtacc 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)