BAC Information

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BAC

Clone NameMSMg01-375C04
Chromosome14 (Build37)
Map Location 78,686,354 - 78,686,856
singlet/doubletsinglet
Overlap geneTnfsf11
Upstream geneD230005D02Rik, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375C04.T7 (MSMg01no375_c04.b1)MSMg01-375C04.TJ (MSMg01no375_c04.g1)
ACCAG480764AG480765
length761773
length of high quality
(start - end)
548 (53 - 600)504 (81 - 584)
definitionCHROMAT_FILE: MSMg01no375_c04.b1 PHD_FILE: MSMg01no375_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:37 2005CHROMAT_FILE: MSMg01no375_c04.g1 PHD_FILE: MSMg01no375_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCCTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGTAATATGCCTAATGTTAAATTATCAACAAAACATC
TCAAATGCTTGACTGTAATAGCCAGTTCCACTATCTGTTTTAACCTGATT
TGGAACACCAAGCATAAATAAAAAATAAAATTAATGCAGGAAATGACTAA
TTACATTTTTAATTGCTTCTCTTATTAAAGCAATTGCAACTAGAAAGCCT
GAAAAAGTGTCAAGTCACATGTACATACTTTAATTTTTCAAAATCAAAAG
TATGAGTAACATCCATTTGCCATAATTGATTAGGTATAAGTCCTTGAGGA
TTAACACCATTATGTGGTACAGTTAGAAACTGAGGGCATTGAGAACAAGT
CTTTACAATTTGACGTGCACATTCTCTTGAAATACCAAATTGCTGTCTCA
AGCTATTACTATTTTGATGATGTAAAGAATGAAATTGTTTGGCAAATTGT
TCCTGTGGAAGGCCTATAACCTTCCTGGTATGCAAATCTGCTGTGGCATT
GCCCTCACTAAGGGGTCCTGGCAATCCAGTATGAGTTCTTAAATGACCTA
CCAGATAAGGAACTGTACATTCTCTTAAATTGAGTTGTATTTGCATAAAT
AATTTCCAAATTTGAGAATTAACAGTATCTTAAAAAAAAGGGGACAATTT
CCAGTAATTGTAAACCTTGACCTTTATATTAAGCTCTCACTAAACAAATT
AAAAACCTTGG
NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATATGAGCTTGTCAGTG
CTGGGGTTATGCACTGAGCGCTGAGATGACCTACTGAGTGCTGGACCTAC
CTACCAAGTGTTGGTATGACCCACTGAGGGCTGGGATGACCTACTGAGTG
CATAGGTTACCTACTGTGTGCTGGGATGACCCACTGAGAGTGAGGATTAC
GAGAGTGCAACAATGTCTAGTATTCCAGGTTCTTTTATTTTTAAAATCCA
TCAAACAAACCCCCACTGGTTCCGGGGATCTAACTCAGATCTTCTTGGTT
GCACTACGCCAACTGAGCTATCCTTCAGCTAAGATTACGTTTTATTCGTC
TCAAAACCCAAAGACAGTTTAAAATGATAGATTTACTAGAATGGATTGCC
CTCAAATAGCCATTTCTTTGGGGTTCGGAAGATTGGGGTAGAGACATACA
TGCTAGAGTATTGTGTCTGTGTGACCAGAGCTCACAGAGTCATCATAAGA
TCCCTTTTTGGTATTGAAACTTCCTTTCTGAATGTCTGAGAAGAATTACC
GTTCTTTGTGTCCTCCAGAGATATAACACCCAGGCCTTTCCTTCCCTGGG
TCCTCTTAATGAGCGCTCTTATTTTCATCCTTGGGCAATTGCAACTCCTT
TCTTTCCCTCGACAGCACCTTCTTGGATGTTGCTTTTTTCACATAGTGCT
ATCTTTATTGAAATTTTTCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_c04.g1 MSMg01no375_c04.g1 CHROMAT_FILE:
MSMg01no375_c04.g1 PHD_FILE: MSMg01no375_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:37 2005
         (504 letters)



>mm_chr14_78686154_78687056
          Length = 903

 Score =  913 bits (472), Expect = 0.0
 Identities = 496/504 (98%), Gaps = 1/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatatgagcttgtcagtgctggggttatgcactgagcgctgagatgacctactgagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 caaatatgagcttgtcagtgctggggttatgcactgagcgctgagatgacctactgagtg 644

                                                                       
Query: 61  ctggacctacctaccaagtgttggtatgacccactgagggctgggatgacctactgagtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 643 ctggacctacctaccaagtgttggtatgacccactgagggctgggatggcctactgagtg 584

                                                                       
Query: 121 cataggttacctactgtgtgctgggatgacccactgagagtgaggattacgagagtgcaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 583 cataggttaactactgtgtgctgggatgacccactgagagtgaggattacgagagtgcac 524

                                                                       
Query: 181 caatgtctagtattccaggttcttttatttttaaaatccatcaaacaaacccccactggt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatgtctagtattccaggttctcttatttttaaaatccatcaaacaaacccccactggt 464

                                                                       
Query: 241 tccggggatctaactcagatcttcttggttgcactacgccaactgagctatccttcagct 300
           |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tccggggatccaactcgggtcttcttggttgcactacgccaactgagctatccttcagct 404

                                                                       
Query: 301 aagattacgttttattcgtctcaaaacccaaagacagtttaaaatgatagatttactaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagattacgttttattcgtctcaaaacccaaagacagtttaaaatgatagatttactaga 344

                                                                       
Query: 361 atggattgccctcaaatagccatttctttggggttcggaagattggggtagagacataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atggattgccctcaaatagccatttctttggggttcggaagattggggtagagacataca 284

                                                                       
Query: 421 tgctagagtattgtgtctgtgtgaccagagctcacagagtcatcataagatccctttttg 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgct-gagtattgtgtctgtgtgaccagagctcacagagtcatcataagatccctttttg 225

                                   
Query: 481 gtattgaaacttcctttctgaatg 504
           ||||||||||||||||||||||||
Sbjct: 224 gtattgaaacttcctttctgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)