BAC Information

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BAC

Clone NameMSMg01-375L15
Chromosome14 (Build37)
Map Location 89,226,000 - 89,354,495
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375L15.T7 (MSMg01no375_l15.b1)MSMg01-375L15.TJ (MSMg01no375_l15.g1)
ACCAG481211AG481212
length754764
length of high quality
(start - end)		538 (49 - 586)534 (78 - 611)
definitionCHROMAT_FILE: MSMg01no375_l15.b1 PHD_FILE: MSMg01no375_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:24 2005CHROMAT_FILE: MSMg01no375_l15.g1 PHD_FILE: MSMg01no375_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,353,962 - 89,354,495)(89,226,000 - 89,226,533)
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATGTGTCTGCCATGGTTTTAATAACTTTATATTCACAGCCT
CATTTAATTATCTAAGGAACACAATTAGGTTATCGCTGAAAAAACAGAAT
GTTCTAAAATACGTACTTGGACCAAAAAGATAAACTATAATACATAGTAA
ATACAATATGTCTCTTCCCCATATGTGTCAATTTTGCTATCCAACTTTAA
ACTGATGGATTGCCGGTATTCTTGTCATTTTTAGCTTAACTCCATTGTTT
TGTCAAAGTGTCCATTCTCAATCTTGGCTTTTCTTACTTCTTAAAATAAT
GTTTCATTTTAAACTTAGTCTCTTTGCAAATCCTGTATATCTTCCTCCAT
TCTCCCCATACACCTTCACCAAGCACAAGCAAACATTGTCCCAGTAACAC
TATGTGCTTTTTGACTTCAACACACTGATTCTACCAGGACTGCCACTGTG
CTCACATGTGTGGCAGCATCCACTAGGGCATCAGCAGACTCCCTGTGCCT
GAGCACATGAAGAATCATGTCTATCCTTCCCCGAGTCATCAATGGTCAAT
AGCTCCTCAGGTAGGATTGGGGCCTCACGAGGCCCTCACTACACATGCTA
GAATGTTCACTGACTTGATCTTTTCCCAGGACATAGCTCCTTAGAATTAT
TTGTTCCGAGGGTTATGTCTAAAAAATACGGAAGGCCTACTTCTTTTTTT
CTGC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTGGTGCTTCAATATATAA
ACCACTCACATTGTCTATATATTGACTAAAATTTTGGCTGTAGCTTAAAT
TTAATTTTTTCAATTATTAAATGGGCACAAATTTTGGATATACTCATTAC
TGAAAAACATCAATAGACCTAGCATCAGCAAGTTAAGGCATAATTTTACA
AAACAGTTTAGCTAAGTGAGATAATATTTAGAAATATTTGATCATTTACA
AAGTTATCTATATGCAATATTTGCTTCTCATTATGAAATATTTTTTAATA
TTTAAATTATCTACATTCTATAAAATATGTATGCTAAATACATGTTCAGC
ATAAAATGTGAACTATAAAAATTTTCATAATCATCATTTACCTGATTTAC
CTGAATTATTTGAATGCTAATGAAGATCTGTTATTGAGTGGCTTTTGTAT
GGTACATAATTTCTTCTTTTTACTTTTGTGATTAAACATTCACTCTATTT
TAGATATGCCTGTTCACTACTTAATGACTATAAGAGTCAATAGTGAAGGT
TTCCACATCTGGAAAGATATGGTTGCTAGAAAATTAATGTATTCCATCAC
CAGCATTCAAGTTAATGCAATATCCCATGAATGAGAAATTGAGTGACTTA
TCATCAAATTGTGGAGGATTTATTTCCACTTTTAATTTTTTAAACCGAAA
AAATATTTAGACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_l15.b1 MSMg01no375_l15.b1 CHROMAT_FILE:
MSMg01no375_l15.b1 PHD_FILE: MSMg01no375_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
         (538 letters)



>mm_chr14_89353758_89354695
          Length = 938

 Score = 1025 bits (530), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtgtctgccatggttttaataactttatattcacagcctcatttaattatc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaattctatgtgtctggcatggttttaataactttatattcacagcctcatttaattatc 679

                                                                       
Query: 65  taaggaacacaattaggttatcgctgaaaaaacagaatgttctaaaatacgtacttggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taaggaacacaattaggttatcgctgaaaaaacagaatgttctaaaatacgtacttggac 619

                                                                       
Query: 125 caaaaagataaactataatacatagtaaatacaatatgtctcttccccatatgtgtcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caaaaagataaactataatacatagtaaatacaatatgtctcttccccatatgtgtcaat 559

                                                                       
Query: 185 tttgctatccaactttaaactgatggattgccggtattcttgtcatttttagcttaactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttgctatccaactttaaactgatggattgccggtattcttgtcatttttagcttaactc 499

                                                                       
Query: 245 cattgttttgtcaaagtgtccattctcaatcttggcttttcttacttcttaaaataatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cattgttttgtcaaagtgtccattctcaatcttggcttttcttacttcttaaaataatgt 439

                                                                       
Query: 305 ttcattttaaacttagtctctttgcaaatcctgtatatcttcctccattctccccataca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcattttaaacttagtctctttgcaaatcctgtatatcttcctccattctccccataca 379

                                                                       
Query: 365 ccttcaccaagcacaagcaaacattgtcccagtaacactatgtgctttttgacttcaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccttcaccaagcacaagcaaacattgtcccagtaacactatgtgctttttgacttcaaca 319

                                                                       
Query: 425 cactgattctaccaggactgccactgtgctcacatgtgtggcagcatccactagggcatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cactgattctaccaggactgccactgtgctcacatgtgtggcagcatccactagggcatc 259

                                                                 
Query: 485 agcagactccctgtgcctgagcacatgaagaatcatgtctatccttccccgagt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcagactccctgtgcctgagcacatgaagaatcatgtctatccttccccgagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_l15.g1 MSMg01no375_l15.g1 CHROMAT_FILE:
MSMg01no375_l15.g1 PHD_FILE: MSMg01no375_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:25 2005
         (534 letters)



>mm_chr14_89225800_89226733
          Length = 934

 Score = 1033 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctggtgcttcaatatataaaccactcacattgtctatatattgactaaaattttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctggtgcttcaatatataaaccactcacattgtctatatattgactaaaattttgg 260

                                                                       
Query: 61  ctgtagcttaaatttaattttttcaattattaaatgggcacaaattttggatatactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtagcttaaatttaattttttcaattattaaatgggcacaaattttggatatactcat 320

                                                                       
Query: 121 tactgaaaaacatcaatagacctagcatcagcaagttaaggcataattttacaaaacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgaaaaacatcaatagacctagcatcagcaagttaaggcataattttacaaaacagt 380

                                                                       
Query: 181 ttagctaagtgagataatatttagaaatatttgatcatttacaaagttatctatatgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagctaagtgagataatatttagaaatatttgatcatttacaaagttatctatatgcaa 440

                                                                       
Query: 241 tatttgcttctcattatgaaatattttttaatatttaaattatctacattctataaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttgcttctcattatgaaatattttttaatatttaaattatctacattctataaaata 500

                                                                       
Query: 301 tgtatgctaaatacatgttcagcataaaatgtgaactataaaaattttcataatcatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatgctaaatacatgttcagcataaaatgtgaactataaaaattttcataatcatcat 560

                                                                       
Query: 361 ttacctgatttacctgaattatttgaatgctaatgaagatctgttattgagtggcttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacctgatttacctgaattatttgaatgctaatgaagatctgttattgagtggcttttg 620

                                                                       
Query: 421 tatggtacataatttcttctttttacttttgtgattaaacattcactctattttagatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatggtacataatttcttctttttacttttgtgattaaacattcactctattttagatat 680

                                                                 
Query: 481 gcctgttcactacttaatgactataagagtcaatagtgaaggtttccacatctg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctgttcactacttaatgactataagagtcaatagtgaaggtttccacatctg 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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