BAC Information

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BAC

Clone NameMSMg01-376E19
Chromosome14 (Build37)
Map Location 69,245,551 - 69,245,980
singlet/doubletsinglet
Overlap geneAdam28
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1
Downstream geneLOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376E19.T7 (MSMg01no376_e19.b1)MSMg01-376E19.TJ (MSMg01no376_e19.g1)
ACCAG481648AG481649
length767775
length of high quality
(start - end)		433 (46 - 478)432 (71 - 502)
definitionCHROMAT_FILE: MSMg01no376_e19.b1 PHD_FILE: MSMg01no376_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:10 2005CHROMAT_FILE: MSMg01no376_e19.g1 PHD_FILE: MSMg01no376_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTGCATCCTACCATGAGTTTTGCCCTTACATCCTTAGAAAAAT
CTTGATAAACCAAATTCTTTTTCCACTTCAGCAAATCAAAGGAGGGCCAT
CCTTTGCTAGCTGTGTGAGACCACATGCACCAAACCACTTCCACTGTTTT
ACTGGTTAAAGGATCAGACCAAAACTGCAGCCAGAATTTACCAATCCTCT
GAACATAAATCTCAAAGCTCCAGCCTGCTTGGTTCTCTTAAAACAAACCA
CACAGAGACCCTCCCATCCTCTCTTATAATTTAGACATGCTTTCATTTGG
CGCCTAAATCTAAATCTAAAATCAAATCATTCCGTTTCCTGGTAAGCAAA
AATGTTTTCATGTTAAGTATTCTCTGATCCCTCCAGTATAGATTTCTGGG
CTATGATTGAAGATGGGAGAAGCTCCAGTCAATTTAAAATACTTTTATAA
CAGATCTATCAATATAGGCAGGTGTCGTATGATGTGGGCTATCTAGGGAG
GCCCTGCAGTATGAGAAGCAGGGTAAGAGAAACTCTCAGTGGCTGGCTTT
TGACGAGCCATGTTGGCCCTGTTGCTTTGGCCATTAATAAAGACCACTTT
TTATTTTCCACAGATAAACTGTTTGAATTTAAGGGAAAAAAATGGCATTT
TGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNCCNNNNNNNNNACNN
NNCGNCNNCNNNCNNAC

ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAAT
GGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGT
TGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAA
TCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAA
ACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCAC
AAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCA
AGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAT
GTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGT
CAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGAT
GTGGAGAAAGAGGAACACTCCTCCCTTGTTGGTGGGAATTGGAGGTTGTA
AAACACTCTGGAAAACCGTCTGGCGGGTTCCCTGAAAATTGGACACTATA
TTACCGAAGATTCCGCAATCCCTCTCCCTGGGCTTTTTCCCAAAAATGCC
CCCTCTGGGAAAAAAGAAAAATGCGTCCCCATGTTTTTTACTCACGTTAT
TTTTTATTTCTGAATCTGGATGAGAACCCCAATGTCCTCCCCCAATATAA
TTGGCCTCNATAAGTGGATTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_e19.b1 MSMg01no376_e19.b1 CHROMAT_FILE:
MSMg01no376_e19.b1 PHD_FILE: MSMg01no376_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:10 2005
         (433 letters)



>mm_chr14_69245347_69246180
          Length = 834

 Score =  754 bits (390), Expect = 0.0
 Identities = 420/430 (97%), Gaps = 1/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttgcatcc-taccatgagttttgcccttacatccttagaaaaatcttgataa 63
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttgcaacagtaccatgagttttgcccttacatccttagaaaaatcttgataa 264

                                                                       
Query: 64  accaaattctttttccacttcagcaaatcaaaggagggccatcctttgctagctgtgtga 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaaattcttcttccacttcagcaaatcaaaggagggccatcctttgctagctgtgtga 324

                                                                       
Query: 124 gaccacatgcaccaaaccacttccactgttttactggttaaaggatcagaccaaaactgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaccacatgcaccaaaccacttccactgttttactggttaaaggatcagaccaaaactgc 384

                                                                       
Query: 184 agccagaatttaccaatcctctgaacataaatctcaaagctccagcctgcttggttctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccagaatttaccaatcctctgaacataaatctcaaagctccagcctgcttggttctct 444

                                                                       
Query: 244 taaaacaaaccacacagagaccctcccatcctctcttataatttagacatgctttcattt 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 taaaacaaaccacacagagaccctcccatcctctcttatcatttagacatgctttcattt 504

                                                                       
Query: 304 ggcgcctaaatctaaatctaaaatcaaatcattccgtttcctggtaagcaaaaatgtttt 363
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 505 ggcgcctaaatctaaatctaaaatcaaatcattccgtttcctgataaacaaaaatgtttt 564

                                                                       
Query: 364 catgttaagtattctctgatccctccagtatagatttctgggctatgattgaagatggga 423
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct: 565 catgttaagtattctctgatccctccagtatagatttctgggctatgaatgaggatgaga 624

                     
Query: 424 gaagctccag 433
           ||||||||||
Sbjct: 625 gaagctccag 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space:   349800
Effective search space used:   349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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