BAC Information

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BAC

Clone NameMSMg01-376G06
Chromosome14 (Build37)
Map Location 88,091,558 - 88,091,894
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G06.T7 (MSMg01no376_g06.b1)MSMg01-376G06.TJ (MSMg01no376_g06.g1)
ACCAG481718AG481719
length762756
length of high quality
(start - end)		490 (39 - 528)463 (72 - 534)
definitionCHROMAT_FILE: MSMg01no376_g06.b1 PHD_FILE: MSMg01no376_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005CHROMAT_FILE: MSMg01no376_g06.g1 PHD_FILE: MSMg01no376_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TGTGTGGCTGCAGCTCAGTGCAGTTGCCATGAAGCCCATGTCTAAGTTGC
AAGGAAAGGAGAGGCCAGAGAGCAAATCTACTCCTTGCTGGCCAGATGGA
AACACTACAGTGAGTGCTCTCTCTGCTGCTTCTCACATAAGCCAGGGATG
TAAGTGGCTGCTTTTTTGTTTGCTTTTAAAGCAGAGGAATGTGGACTTAT
CCAGGAAAAAGTAAGAGAATTTAAATAATCCTGCCTGTCTTTCTATTTGT
CATTTTGACTTTCGCTCTCTTCCCTCATATCTATCTCTTTCTCTTTCTCT
TTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTT
CTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCT
CTTTCTCTGTCTCTGTCTCTGTCTCTTTGTCTCTGTGTCTCTGTGTCTGT
CTGTCTCTCTCTCTCTCTCTCTGTGTTGGTGAGGAGAAAAAGTTTGAAAA
CTTTACTTATTTGTTTATATAATCCACTAAAAATTATTAAATTTGGGATT
GAAACCCCTTTTATCCCTACTATTTGTTCTGTTTTCTGCCCTTAATGCCA
GAAAATTTATTGTTAAAAAATTAAATTAAATTTCCCTCTTATAAAAAAAC
TGAATGCCTCTCTTTTTTCATAAAAATACTTTTTACCCCACACCTCATCT
TCGCTATCCCAN

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCACATACCTAAACATCATAAAAGCA
ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGA
AGCAATCCCACTAAAATCAGGGACTAGAAAAGGCTGCCTACTTTCTCCCT
ACCTTTTCAACATAGTACTTGAACTATTAGCCAGAGCAATTTGACAACAA
AAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACT
TTTTGCAGATGATATGATAGGTTCGTTGAAGTAGCTGGATATAAATTTAT
TCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAA
AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAAT
ACCTTGGCATGACTCTAACCAAGGAAGTGAAAGATCTGTATGATAAAAAC
TTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGA
TCTCCCATGCTCATAGATTGGCAGGATAAATATTGTAAAAATGGCTATCT
TGGCCAAAGCAATCTACAGATTCATTGCAATCCCCAACACAATTCCCATT
CCATTCTTCTACGAATTAAAAGGAGAAAATTGCAAATTTATCTGGGATAA
CAAAAAACTCGGAAGGCTAAATTCCTTTCATGGATATATAAACCTCTTGG
GGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g06.b1 MSMg01no376_g06.b1 CHROMAT_FILE:
MSMg01no376_g06.b1 PHD_FILE: MSMg01no376_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:17 2005
         (490 letters)



>mm_chr14_88091369_88092258
          Length = 890

 Score =  528 bits (273), Expect = e-154
 Identities = 313/337 (92%), Gaps = 17/337 (5%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgtgtggctgcagctcagtgcagttgccatgaagcccatgtctaagttgcaagg 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaattctgtgtggctggagctcagtgcagttgccatgaagcccatgtctaagttgcaagg 249

                                                                       
Query: 67  aaaggagaggccagagagcaaatctactccttgctggccagatggaaacactacagtgag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaggagaggccagagagcaaatctactccttgctggccagatggaaacactacagtgag 309

                                                                       
Query: 127 tgctctctctgctgcttctcacataagccagggatgtaagtggctgcttttttgtttgct 186
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 310 tgctctctctgctgcttctcacataagccagggatgtaaatggctgcttttttgtttgtt 369

                                                                       
Query: 187 t-----------------ttaaagcagaggaatgtggacttatccaggaaaaagtaagag 229
           |                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgtttgttttgtttgtttttaaagcagaggaatgtggacttatccaggaaaaagtaagag 429

                                                                       
Query: 230 aatttaaataatcctgcctgtctttctatttgtcattttgactttcgctctcttccctca 289
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 430 aatttaaataattctgcctgtctttctatttgtcattttgactttctctctcttccctca 489

                                                
Query: 290 tatctatctctttctctttctctttctctttctcttt 326
           | ||||||||||||||||||||||||||| |||||||
Sbjct: 490 tctctatctctttctctttctctttctctgtctcttt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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