BAC Information

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BAC

Clone NameMSMg01-376J11
Chromosome14 (Build37)
Map Location 79,529,018 - 79,529,439
singlet/doubletsinglet
Overlap gene1300010F03Rik
Upstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, LOC629709
Downstream geneLOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376J11.T7 (MSMg01no376_j11.b1)MSMg01-376J11.TJ (MSMg01no376_j11.g1)
ACCAG481872AG481873
length754739
length of high quality
(start - end)		529 (68 - 596)529 (74 - 602)
definitionCHROMAT_FILE: MSMg01no376_j11.b1 PHD_FILE: MSMg01no376_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:31 2005CHROMAT_FILE: MSMg01no376_j11.g1 PHD_FILE: MSMg01no376_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATCCCAGTATCAAGTGATGGGCATGGTCAGTACGCTAAAAGTACCG
TATGAAGCTGCCTTTAGGAACTGAATCTCATGTTTAGATTTGAGTACTAT
CCCAAAGAAATTTCATCATCTACACAAACATTCCAGAAGTCTAAAAGAAC
CTGAAACTTGCAACACTTTTGGTCAAAGCATTCAGAAGGGAAACTGAATC
TGTATAATAAAAGCAAATGAATAGCCAGCCTCTGGTTACTGTGATGGCTA
GTTTTATGTCAGCTTGACTGATGTCTAGAGTCAGTCATCTGAGAGGAGGG
AACCTCTATGGAAAAAAAAAATGCCTCTGTAAGATCTGGCTGTAGGGCAT
TTTCTTAAATAGTGATCAAGGGAGGGGGGCTCAGCCTATTGTGGATGGTG
GCATACCTGGGCTGGTAGTCTTGGGATCTATATGAAAGCAGGCTGAGCAA
GCCATGGGGAGCAAGCCAGTAAGCAGCACCCCTCCAAGGTCTCTGCATCA
GCTCCTGCCTCTAGGATCCTGCTCAGTTTGAGTTCCTATGCTGACTTCCT
TTCATGAAGAACAGTGATGAGGATATGTAAGCCAAAAAAAAAAAAAAACC
CCTTAAAAACCAATTTTAATAAACCATAAACCCAAAAAAACCCTTTTCCT
CCTCAAGTTGCTTTTGGGCAAGGGGTTTTGACCCCCGCTCTAGTAACCTA
TGAA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAAACAGCCACATTTAAGGATTAAG
ATGAGAACTCTGCAGTATTGGGGAGAAAGCTGAGGAAAATCAGTCATGGG
ACTGTTATATTAACCTGGTCGAGAGATTGTGGGGGCTTTGGCTAGCCATG
AGGTTGGTAAGAGGCAAATGCATTTAGGTTGTTTGGAGGTAGAGTCAATA
TGATTTCCTAAAGACCTGAATACAGGGCTCAGTCAAGGAATCAAGGATAA
TTATAAGCTTTACAGATTGTGGGATTTTTTTGATCAAGTTGAGAATGGAA
TGGCTGTAGAAAAATCAAGATCCCATGTTTGAGCATATTTGATGTGCTTG
TTAGATATCCACATGGAGAGTCAAAGGGGCTGTGGCAGGCACAGGTCAGC
ATTTCATAGATTCACAAGAGAAAAACCAGGAGTTATGAAAATAGATGATT
TCTAAAATTATTTATCTGGATATGATAGAATTTTTTTTTAATAAGGAAAT
ATACCTAAGTCCTCCTGGAAACATGAAACAAGGATTCCGTTCCATGATGA
TTTTGGTATCCCATCTACTGTGAGCACATTATGTTCTCACATTAACAGAT
GTGAGCCCTGTGTCTCATCCGGCCAGGAATTATAAATGGTTCCATGTTTT
TCTTCCCTCTGCTCCCCCCAAAACTTAGCCTGTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_j11.b1 MSMg01no376_j11.b1 CHROMAT_FILE:
MSMg01no376_j11.b1 PHD_FILE: MSMg01no376_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:31 2005
         (529 letters)



>mm_chr14_79529018_79529946
          Length = 929

 Score =  727 bits (376), Expect = 0.0
 Identities = 412/424 (97%), Gaps = 2/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgatgggcatggtcagtacgctaaaagtaccgtatgaagctgcctttaggaactgaatct 61
           |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 422 tgatgggcatggtcagtatgctaaaagtaccatatgaagctgactttaggaactgaatct 363

                                                                       
Query: 62  catgtttagatttgagtactatcccaaagaaatttcatcatctacacaaacattccagaa 121
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 catgtttagatttgagtactatcccaaagaaatctcatcatctacacaaacattccagaa 303

                                                                       
Query: 122 gtctaaaagaacctgaaacttgcaacacttttggtcaaagcattcagaagggaaactgaa 181
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 302 gtctaaaagaacctgaaacttgcaacactttcggtcaaagcattcagaagggaaactcaa 243

                                                                       
Query: 182 tctgtataataaaagcaaatgaatagccagcctctggttactgtgatggctagttttatg 241
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 242 tctgtataataaaagcaaatgaatagccagcccctggttactgtgatggctagttttatg 183

                                                                       
Query: 242 tcagcttgactgatgtctagagtcagtcatctgagaggagggaacctctatggaaaaaaa 301
           ||||||||||||| | ||||| |||||||||||||||||||||||||||||||  |||||
Sbjct: 182 tcagcttgactgaag-ctagaatcagtcatctgagaggagggaacctctatgg-gaaaaa 125

                                                                       
Query: 302 aaatgcctctgtaagatctggctgtagggcattttcttaaatagtgatcaagggaggggg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaatgcctctgtaagatctggctgtagggcattttcttaaatagtgatcaagggaggggg 65

                                                                       
Query: 362 gctcagcctattgtggatggtggcatacctgggctggtagtcttgggatctatatgaaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gctcagcctattgtggatggtggcatacctgggctggtagtcttgggatctatatgaaag 5

               
Query: 422 cagg 425
           ||||
Sbjct: 4   cagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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