BAC Information

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BAC

Clone NameMSMg01-377K20
Chromosome14 (Build37)
Map Location 107,670,137 - 107,670,605
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377K20.T7 (MSMg01no377_k20.b1)MSMg01-377K20.TJ (MSMg01no377_k20.g1)
ACCAG482702AG482703
length782709
length of high quality
(start - end)		474 (45 - 518)306 (74 - 379)
definitionCHROMAT_FILE: MSMg01no377_k20.b1 PHD_FILE: MSMg01no377_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:56 2005CHROMAT_FILE: MSMg01no377_k20.g1 PHD_FILE: MSMg01no377_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATATACTTTCATCTCTAAGGTGTAAAACTGATGGATCATTTTAG
TATAAATAGAAAAAAACTTACTTTCAGTGAATAAATGGCACCCTACTATG
AACACACACAGGTTTGACTTTCTTCAGTGAACTATGAATTCAGTTATGAA
TATTATTGAAAATAAACTCCAGATGCATGTTATAAGAAGTATTTAATTCT
AGTTAACAGTATTTTCTAATATACCTACTATGTGTTTCCTTATTATAAAA
AGAAACAAGTCAATTAGAGTCTCTATGCACTGCGTATGTGTCACAGTAGG
CTATAACATGATATAGAGTCAATGAAGACTTCTGAATGCAAAGCAAAATT
AGTGGTGGTGAGTTTTAAGAAATCTAAATGTAAAATTCCCAACAAGGTTT
ACAGAACAAGCTGATTATGAAATGCAGTTATATTTCTCCATTGAAATTCA
TGAGAACTTATAAAAAGCAAGACTTTTAAAAGACAGAAAAGTGCCTTAGG
ACATTTCACAACTTTGTCATCTGCGAATGTCAAATGAGTGATAAAATAAG
TTATTTTTCATAGGGTCTGTAAGTGTGTCACAATGTAAAATGATCTAAAC
CCCCCAGTACCTAATTCTTCCCCTCCGTACCCTACTGTCGTTTTTACCCA
CATTACTCCTTCTCCGTCATTTACCCCCCTCCTTCCCAACACCTTTTCTT
TACATTTTCTTTTTCCTTCCTATCTAATAACG

NCCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCATTTGAGAATTCCAAGATATAATT
TGCAAACCACATGAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTT
CATTCCTTCTTAAAATGGGGAACAAAATACCCATGGAGAGAATTACAGAG
ACAAAGTTTGGAGCTGAGTCATAAGGAAGGACCATCCAGAGACTGCCCAA
GCTGGGGATCCATCCCATAAACAGTCACCATACCCAGACACTATTTCATA
TGCCAGCAAAATTTGCCGAAAGGACCCTGATATAGCTGTCTCTTGTGAAG
CTCTGCCAGTGCCTAGTANATACAGAAGCAGATGCTCACAGTCATCTATT
GGATGGAACACAGGGGCCCCCAATGGAGGAGCTAGAGAAAATATCCCAAG
GAGTTTGAAGAGTCTGCCACCCCTATAGGAGAAACAGCATTTTGAATTAA
CCGGCCCCCCCAAAAGTTGGGGTCCTTAGCTGCTAATGGCGCCAAAAAAA
GGGCCATATCCCCCTTCTCTGGGGAGGAAGAGCCTTTTGGTTTTTTTAAA
TTAATTTTCCCCCACACTGTTATTTTGCCTCTTCCTTTTACCCTAATTGC
GCTTTTTTCCTCCTTTTCTCCCCCCCTATTCACCCTTTTTTTCTTTTCAT
CCACCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_k20.b1 MSMg01no377_k20.b1 CHROMAT_FILE:
MSMg01no377_k20.b1 PHD_FILE: MSMg01no377_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:56 2005
         (474 letters)



>mm_chr14_107669933_107670806
          Length = 874

 Score =  862 bits (446), Expect = 0.0
 Identities = 464/470 (98%), Gaps = 2/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatatac-tttcatctctaaggtgtaaaactgatggatcattttagtataaat 63
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatatacattt-atctctaaggtgtaaaactgatggatcattttagtataaat 263

                                                                       
Query: 64  agaaaaaaacttactttcagtgaataaatggcaccctactatgaacacacacaggtttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 agaaaaaaacttactttcagtgaataaatggcaccctactatgaacacacacaagtttga 323

                                                                       
Query: 124 ctttcttcagtgaactatgaattcagttatgaatattattgaaaataaactccagatgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttcttcagtgaactatgaattcagttatgaatattattgaaaataaactccagatgca 383

                                                                       
Query: 184 tgttataagaagtatttaattctagttaacagtattttctaatatacctactatgtgttt 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 tgttataagaagtatttaattctagttaacagtattttctaatatatctactatgtgttt 443

                                                                       
Query: 244 ccttattataaaaagaaacaagtcaattagagtctctatgcactgcgtatgtgtcacagt 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ccttattataaaaagaaacaagtcaattagagtctctatgcactgcatatgtgtcacagt 503

                                                                       
Query: 304 aggctataacatgatatagagtcaatgaagacttctgaatgcaaagcaaaattagtggtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 aggctataacatgatatagagtcaatgaagacttctgaatgcaaagcaaaattagtgatg 563

                                                                       
Query: 364 gtgagttttaagaaatctaaatgtaaaattcccaacaaggtttacagaacaagctgatta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgagttttaagaaatctaaatgtaaaattcccaacaaggtttacagaacaagctgatta 623

                                                             
Query: 424 tgaaatgcagttatatttctccattgaaattcatgagaacttataaaaag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaaatgcagttatatttctccattgaaattcatgagaacttataaaaag 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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