BAC Information

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BAC

Clone NameMSMg01-377O17
Chromosome14 (Build37)
Map Location 28,685,560 - 28,847,374
singlet/doubletdoublet
Overlap geneErc2
Upstream geneDnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377O17.T7 (MSMg01no377_o17.b1)MSMg01-377O17.TJ (MSMg01no377_o17.g1)
ACCAG482888AG482889
length765791
length of high quality
(start - end)		496 (73 - 568)428 (77 - 504)
definitionCHROMAT_FILE: MSMg01no377_o17.b1 PHD_FILE: MSMg01no377_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:16 2005CHROMAT_FILE: MSMg01no377_o17.g1 PHD_FILE: MSMg01no377_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,846,879 - 28,847,374)(28,685,560 - 28,685,987)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCTGATCATTAGAAGATTGGTATCTTTCCTCTGTGCAGAATGGA
AAAATGCCTGAGATTTTGTGTTTGTTTGCTTTTGTTTTTGTTTTGTAGAC
CCTTAAATTAAATGTAAGTCCTGCATGCAGTATGTTTACAAGAGGCGGGA
TTTTAAATGGATAGTGACTGGCCAGAGAGAGCTCACAGAAGCACGTCAGA
GGGTTTTCAAATGCACCCTTAGCAGCAACGGGGTATATTATAAAGTACTC
AATTAACGTGTCTGAAAAGCCAAATATTCTTTTAATATATAGGAAAGACT
TCTGGACTCCATCTCTGAGTGTACTAGGGCTATAACCAAGACAGCATTTG
AAAGCAATGATAAACTGTATTATTTGTCTAGAATTAGAAACTAAGGGAAA
AAACAGACTCAGTGCACGTTAACCTACATATATTTAACGTGACAACACAA
AACTCCTTCAGGATCAGAGACTGGTAGTTAAGTGAAGACAGGTTATTATT
AGGAGAAATAATTAAGATTCAAAGACAAACTTTTAAGTTCCTACGAAATG
ACATCAGCACATTATTTAGCAGAAGGGAGTACCTACAGCAAAGGAATAGA
CAGTAAATGCTTTATTTGTGCTTCAGAATGTATTTGCCCGAAAACGCCTA
AACCTGATCCTTATTTCCTCTGAGTGTACACACCATGACTTTGTCCACAC
AGCAAAATGCCCCCN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACTTTAAAATTTTCAATTTCAA
TTCGTGTAGAGATCTTTGACCCAGAAAAGCCTTAAGTTGAAGTGTACTTA
AGCTAAACTTTGTGCTCCTTTTTACCAGGTGGAAACATCAAGTTCTCCCA
GGGAAAGCCACTTGCTATTTCAGATGTTTGGTGGTGCATCTTGCAGACAG
TTAGGAATAGTTTCAAGCATCCTGGAGGGAACTCATCTACTGTACAGTTG
GAAAAACTTGGGCATGTAATCACACACTAAAGTCTCTAGCGATTTCCAAG
CAGCAAGCAACTCAGGATTGATAAGGCGTTTCTTTCCCTTGCAGCCATTG
TAGAGGCTGAGGCAGAGAAGCTGGGGTTTCTCCAGGTAAAGTCTGCAGTC
CCAAGGCTTATCTTCACAGGAGTGTGTTGTTAACTCACACTCTCCTTTGC
TGTAGCTGTTCAGAATCACTTTTCGACTTTTGATTGAATCCCGAAATTCA
ATCAATGCTCCAATTCCTGTTTTCAGGGAATCAGGCTTCTCTTACACTAA
AGGCGGGGCATCTTTTCTGGCATAATGAGCCCTTTTCCCTTGGAATTAAA
CAAAAGGAAGGGGACGGAGGCCAACAAAAAAATTAAAAAGTCGGCCGGGG
AAAACCTCTTTATTCCTGTCTATTGTCCACTGGTTATTTTAAACCACTCT
ATATGGTGTTTGCGCCCCCCCTTCCCTCCCCAATTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_o17.b1 MSMg01no377_o17.b1 CHROMAT_FILE:
MSMg01no377_o17.b1 PHD_FILE: MSMg01no377_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:16 2005
         (496 letters)



>mm_chr14_28846679_28847574
          Length = 896

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtatctttcctctgtgcagaatggaaaaatgcctgagattttgtgtttgtttgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ttggtatctttcctctgtgcagaatggaaaaatgcctgagattttgtgtttgtttgcttt 637

                                                                       
Query: 61  tgtttttgttttgtagacccttaaattaaatgtaagtcctgcatgcagtatgtttacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgtttttgttttgtagacccttaaattaaatgtaagtcctgcatgcagtatgtttacaag 577

                                                                       
Query: 121 aggcgggattttaaatggatagtgactggccagagagagctcacagaagcacgtcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aggcgggattttaaatggatagtgactggccagagagagctcacagaagcacgtcagagg 517

                                                                       
Query: 181 gttttcaaatgcacccttagcagcaacggggtatattataaagtactcaattaacgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gttttcaaatgcacccttagcagcaacggggtatattataaagtactcaattaacgtgtc 457

                                                                       
Query: 241 tgaaaagccaaatattcttttaatatataggaaagacttctggactccatctctgagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgaaaagccaaatattcttttaatatataggaaagacttctggactccatctctgagtgt 397

                                                                       
Query: 301 actagggctataaccaagacagcatttgaaagcaatgataaactgtattatttgtctaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 actagggctataaccaagacagcatttgaaagcaatgataaactgtattatttgtctaga 337

                                                                       
Query: 361 attagaaactaagggaaaaaacagactcagtgcacgttaacctacatatatttaacgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 attagaaactaagggaaaaaacagactcagtgcacgttaacctacatatatttaacgtga 277

                                                                       
Query: 421 caacacaaaactccttcaggatcagagactggtagttaagtgaagacaggttattattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caacacaaaactccttcaggatcagagactggtagttaagtgaagacaggttattattag 217

                           
Query: 481 gagaaataattaagat 496
           ||||||||||||||||
Sbjct: 216 gagaaataattaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_o17.g1 MSMg01no377_o17.g1 CHROMAT_FILE:
MSMg01no377_o17.g1 PHD_FILE: MSMg01no377_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:16 2005
         (428 letters)



>mm_chr14_28685360_28686187
          Length = 828

 Score =  781 bits (404), Expect = 0.0
 Identities = 422/428 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactttaaaattttcaatttcaattcgtgtagagatctttgacccagaaaagccttaag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttttaaattttcaatttcaattcgtgtagagatctttgacccagaaaagccttaag 260

                                                                       
Query: 61  ttgaagtgtacttaagctaaactttgtgctcctttttaccaggtggaaacatcaagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagtgtacttaagctaaactttgtgctcctttttaccaggtggaaacatcaagttct 320

                                                                       
Query: 121 cccagggaaagccacttgctatttcagatgtttggtggtgcatcttgcagacagttagga 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cccagggaaagccacttgctatttcagatgtttggcggtgcatcttgcagacagttagga 380

                                                                       
Query: 181 atagtttcaagcatcctggagggaactcatctactgtacagttggaaaaacttgggcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtttcaagcatcctggagggaactcatctactgtacagttggaaaaacttgggcatg 440

                                                                       
Query: 241 taatcacacactaaagtctctagcgatttccaagcagcaagcaactcaggattgataagg 300
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 441 taatcacacactaaagtctctagtgatttccaagcagcaagcagctcaggattgataagg 500

                                                                       
Query: 301 cgtttctttcccttgcagccattgtagaggctgaggcagagaagctggggtttctccagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 cgtttctttcccttgcagccattgtagaggctgaggcagagaagctggggcttctccagg 560

                                                                       
Query: 361 taaagtctgcagtcccaaggcttatcttcacaggagtgtgttgttaactcacactctcct 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagcctgcagtcccaaggcttatcttcacaggagtgtgttgttaactcacactctcct 620

                   
Query: 421 ttgctgta 428
           ||||||||
Sbjct: 621 ttgctgta 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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