BAC Information

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BAC

Clone NameMSMg01-379I16
Chromosome14 (Build37)
Map Location 102,824,892 - 102,969,890
singlet/doubletdoublet
Overlap geneLOC669278
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379I16.T7 (MSMg01no379_i16.b1)MSMg01-379I16.TJ (MSMg01no379_i16.g1)
ACCAG484130AG484131
length754749
length of high quality
(start - end)		579 (63 - 641)573 (69 - 641)
definitionCHROMAT_FILE: MSMg01no379_i16.b1 PHD_FILE: MSMg01no379_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:20 2005CHROMAT_FILE: MSMg01no379_i16.g1 PHD_FILE: MSMg01no379_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:20 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(102,969,486 - 102,969,890)(102,824,892 - 102,825,464)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAAATGTTCCCGTCTTCAGTGATTTTTGTAGTACTTTGTGGGTTTGCATA
AGAATCTTGCTATGTAGCTTTGTTTAGAATAACTGAAAAATATTAATGGA
TTAAATTATTAAAGACCCAATCTTTCACCAATAAGAAAACATTAACTACA
AAGGAAGGAAGTAGTGTGTTAAAATACTTAGACATTAAGAAACATGTGTC
ACAGAAACACCACAAGCTCCTTACAAATAAAGATGCCATTGTTAATTGTG
AGCAAGCCAAACTAATTAACATAGCAAATAACTAGAATAAATAAAATATA
CATTGAAAATGTGGAGAGAAAAGGAAAGAATGAAAGCTACCTCATGAGTA
ACTTTATTGAAGTTAATACAAATGGGATTGAGAGAGACAGAGCTTTGTCT
GAGAAATAAGAAGTTAGCCCTTCTTCAAAGTGACCTCTAATTTTAATATA
ACTTTTATTTGATACAATCATGAATTGTTTTACAGGTTCCAAATGGAAGA
AATAAATCAATTACAAACCTTAAAAGGCGAGTTTATTTTTTTCTTTTCCA
AAAGTCAACACATTTGAAGTTCCACAAGCAATCTCAACTAAAACAGGTAT
GAAACAATTATTAGTGATATGGGTACATAAGAAGATACACATGACTTTGC
TTTAATGGNGGAATTATAAATAAAATATGATATTGATCTTGGTGTTGCAC
CTAN

AGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGAGGAACTAAAATTTCTAAATCATATGAG
GAAAAAAAAGAATGGTTGTGGTCTGAGGGTGCAGGAACAGAAAAACGGAC
AAAAGGCACAAGGTCAGGCACAGGAAAGGCAAGTACTAGGAATCGGCACT
TAATACTGATGCCTGCCATTAGCAACGCACATTACATACTTAAAATATGA
TTGGGGCAGGACCTACATTAAGCACTCTTCCCATAGTAATTTTAAAGCAA
GGAGAACAGGAGGAAAATAGGAGGAAGCAGATAGGCTATAGCACAGACTG
TGCGGAGAGTTTCATAGTTGTGGAAAAATCTCAGGACTCAGCCAGGCCAG
CCGCAGTACACGCTGTTTTATGTCATTCACACAACAATCTCCAAAAAGAA
AAGTATTCTCCAAAATCTTTACCTTTTAACAGACTTTAATAAAAAATATT
TCCTAAGAAAATTTTAGTTTTTTATATATCAAGCATTCCTTATTCCTGAG
GAAACTACATGAAGTTTGGCTGCATTCTAAAATATAATATAAAAAAGAAA
ATCTTCACTCCTAAGAGGTGCTATGAAGTGCGCATATTGGCCAGCTTCTA
CATCAGTCCTAAAAGCTTACTTTTTATTCCCTGTCAGTGAAAACGTCATT
TTCTAACACTAAGGCTGAAGAGGAATTCAGCGTCTTTTTTCAGAGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_i16.b1 MSMg01no379_i16.b1 CHROMAT_FILE:
MSMg01no379_i16.b1 PHD_FILE: MSMg01no379_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:20 2005
         (579 letters)



>mm_chr14_102969112_102970090
          Length = 979

 Score =  760 bits (393), Expect = 0.0
 Identities = 402/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 175 aagaaacatgtgtcacagaaacaccacaagctccttacaaataaagatgccattgttaat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 779 aagaaacatgtgtcacagaaacaccacaagctccttacaaataaagatgccattgctaat 720

                                                                       
Query: 235 tgtgagcaagccaaactaattaacatagcaaataactagaataaataaaatatacattga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgtgagcaagccaaactaattaacatagcaaataactagaataaataaaatatacattga 660

                                                                       
Query: 295 aaatgtggagagaaaaggaaagaatgaaagctacctcatgagtaactttattgaagttaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 659 aaatgtggagagaaaaggaaagaatgaaagctacctcatgagtaacttttttgaagttaa 600

                                                                       
Query: 355 tacaaatgggattgagagagacagagctttgtctgagaaataagaagttagcccttcttc 414
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 599 tacaaatgggattgagagagacagaactttgtctgagaaataagaagttagcccttcttc 540

                                                                       
Query: 415 aaagtgacctctaattttaatataacttttatttgatacaatcatgaattgttttacagg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaagtgacctctaattttaatataacttttatttgatacaatcatgaattgttttacagg 480

                                                                       
Query: 475 ttccaaatggaagaaataaatcaattacaaaccttaaaaggcgagtttatttttttcttt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttccaaatggaagaaataaatcaattacaaaccttaaaaggcgagtttatttttttcttt 420

                                                        
Query: 535 tccaaaagtcaacacatttgaagttccacaagcaatctcaactaa 579
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tccaaaagtcaacacatttgaagttccacaagcaatctcaactaa 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_i16.g1 MSMg01no379_i16.g1 CHROMAT_FILE:
MSMg01no379_i16.g1 PHD_FILE: MSMg01no379_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:20 2005
         (573 letters)



>mm_chr14_102824692_102825664
          Length = 973

 Score = 1085 bits (561), Expect = 0.0
 Identities = 570/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaggaactaaaatttctaaatcatatgaggaaaaaaaagaatggttgtggtctgagg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaggaactaaattttctaaatcatatgaggaaaaaaaagaatggttgtggtctgagg 260

                                                                       
Query: 61  gtgcaggaacagaaaaacggacaaaaggcacaaggtcaggcacaggaaaggcaagtacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaggaacagaaaaacggacaaaaggcacaaggtcaggcacaggaaaggcaagtacta 320

                                                                       
Query: 121 ggaatcggcacttaatactgatgcctgccattagcaacgcacattacatacttaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatcggcacttaatactgatgcctgccattagcaacgcacattacatacttaaaatat 380

                                                                       
Query: 181 gattggggcaggacctacattaagcactcttcccatagtaattttaaagcaaggagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattggggcaggacctacattaagcactcttcccatagtaattttaaagcaaggagaaca 440

                                                                       
Query: 241 ggaggaaaataggaggaagcagataggctatagcacagactgtgcggagagtttcatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggaaaataggaggaagcagataggctatagcacagactgtgcggagagtttcatagt 500

                                                                       
Query: 301 tgtggaaaaatctcaggactcagccaggccagccgcagtacacgctgttttatgtcattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggaaaaatctcaggactcagccaggccagccgcagtacacgctgttttatgtcattc 560

                                                                       
Query: 361 acacaacaatctccaaaaagaaaagtattctccaaaatctttaccttttaacagacttta 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacagcaatctccaaaaagaaaagtattctccaaaatctttaccttttaacagacttta 620

                                                                       
Query: 421 ataaaaaatatttcctaagaaaattttagttttttatatatcaagcattccttattcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaaaaatatttcctaagaaaattttagttttttatatatcaagcattccttattcctg 680

                                                                       
Query: 481 aggaaactacatgaagtttggctgcattctaaaatataatataaaaaagaaaatcttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaactacatgaagtttggctgcattctaaaatataatataaaaaagaaaatcttcac 740

                                            
Query: 541 tcctaagaggtgctatgaagtgcgcatattggc 573
           |||||||||||||||||||||| ||||||||||
Sbjct: 741 tcctaagaggtgctatgaagtgtgcatattggc 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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