BAC Information

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BAC

Clone NameMSMg01-379L08
Chromosome14 (Build37)
Map Location 22,044,460 - 22,119,319
singlet/doubletdoublet
Overlap geneAdk
Upstream geneLOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379L08.T7 (MSMg01no379_l08.b1)MSMg01-379L08.TJ (MSMg01no379_l08.g1)
ACCAG484256AG484257
length761763
length of high quality
(start - end)		490 (41 - 530)463 (72 - 534)
definitionCHROMAT_FILE: MSMg01no379_l08.b1 PHD_FILE: MSMg01no379_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:32 2005CHROMAT_FILE: MSMg01no379_l08.g1 PHD_FILE: MSMg01no379_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,044,460 - 22,044,945)(22,118,857 - 22,119,319)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGATTCTAACGAAAACAATACATGCCTTAGGCAATCTATTTGATTCATCT
TAACAAAAGAGAACTTCATTATGTAGCAAGCAAGAAAGCAATGTCAAAAA
ATAGTGGTAAGAATCATTTTGTAAATCTTGGTAGGATAGATATAGAAAGC
TATATTGCCCTCTTGGTAGAAATCTTGACACTTGAAGGATTCTGGTGAAA
GTGGGATTTATTAAAACTTACAGCTGTGTGGTCCTCCCCACCGCCCCAGA
GGCTATTGGCTACCAGCCCACAAGGACAAAGGGAATATAGTTGAGGAACA
TGGTTCCGGTGGCCCGAGTCTGACAGAAATGACAGAAACCCGGCATGAGC
TTCAGAGGCAGCTCAGCTGTGGGGTGGGTCAAGGGAGGGCTATATCACTT
TTGGGAAAGGGGTAGGGATTTCCAGGGTGGGTATGTAGCATTGTCTATAG
CAAGGGTACCTAAGAATGCCTCCTTTGCCTGNAGAGGCTTGCCAGGAATT
CTAGGTGCTTGCTGAACAGGTTTTTTGGAGAAAGAAAGTTGAAGTTGTAA
TCTCACCCAGGCTACCTGAAGTTCCCAGGTAAAGGGTGGTAAGGTTTTAG
GTTTTCCCGATAGGGGCCAGAAAAAGAGTATTCCTCGCTGTTCAAAGTCG
TTCTTCCCCTTTTGTTCTCAACATAAAACGCCCTTTTTCTATCCGGTTAT
AATTAATTCCC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAGAAACACACAGACGCTAGGGGAAAG
GCAGAGGAACTACAAAGGCTGAAGGAGGGGGAGAAAGAAGTTAGACTTCC
CAAAAGAAGTTACTGTTAAAATATGACAGAGCAACGATCCCAAGACTCCA
GAAGAGATGTATTTCTTCCTAGAATGCCACATGAATGAGGAAGTGAAATG
TTAGACATGTAGGTTTCAGAGACTCTTTCTTCCTGTATTCTTTCTCAGAA
AGAAGAGTGAGGGGGAAATGCAAGCTATCAAAAACCAAAACAAACCAATA
CCCAAACCAACACATTTAAATGAGGAGAGTATGTACGTAGGAGTCCTGCA
ATGGAACACTTAGCACAGATCTGACACGAAGGGGATTTAGAGCTGTGAGG
ATGCTTAGAGCAGAAGAATGAAGGGTCTCANAAGCAAGGTCCTCAAGACG
AACAGGGCAAGCAGACACGGCATGAAACGCTAGTGGAAGAGTTAATGGGT
GGCTGACCAGTTACTCTGTACAAAGTATTTAGCGCTATGAGGAGACACTT
GTATATAAGTCACCCTGATTCACGAAAAGCGGACGGAAAAGGAAAGATGG
AAGACTTCCCACCCCCCCAAAAAATTCCCTGAAGTTATAGAACTTTTTTC
CCCGGGGGAAACAAGGATCTTTTCTTTTTTTTTTTTTCCCCCCCCCCCTT
CCCCCCCTAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_l08.b1 MSMg01no379_l08.b1 CHROMAT_FILE:
MSMg01no379_l08.b1 PHD_FILE: MSMg01no379_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:32 2005
         (490 letters)



>mm_chr14_22044256_22045145
          Length = 890

 Score =  924 bits (478), Expect = 0.0
 Identities = 484/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgattctaacgaaaacaatacatgccttaggcaatctatttgattcatcttaac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgattctaaagaaaacaatacatgccttaggcaatctatttgattcatcttaac 264

                                                                       
Query: 65  aaaagagaacttcattatgtagcaagcaagaaagcaatgtcaaaaaatagtggtaagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaagagaacttcattatgtagcaagcaagaaagcaatgtcaaaaaatagtggtaagaat 324

                                                                       
Query: 125 cattttgtaaatcttggtaggatagatatagaaagctatattgccctcttggtagaaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattttgtaaatcttggtaggatagatatagaaagctatattgccctcttggtagaaatc 384

                                                                       
Query: 185 ttgacacttgaaggattctggtgaaagtgggatttattaaaacttacagctgtgtggtcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgacacttgaaggattctggtgaaagtgggatttattaaaacttacagctgtgtggtcc 444

                                                                       
Query: 245 tccccaccgccccagaggctattggctaccagcccacaaggacaaagggaatatagttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccccaccgccccagaggctattggctaccagcccacaaggacaaagggaatatagttga 504

                                                                       
Query: 305 ggaacatggttccggtggcccgagtctgacagaaatgacagaaacccggcatgagcttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaacatggttccggtggcccgagtctgacagaaatgacagaaacccggcatgagcttca 564

                                                                       
Query: 365 gaggcagctcagctgtggggtgggtcaagggagggctatatcacttttgggaaaggggta 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaggcagctcagctgtggggtggatcaagggagggctatatcacttttgggaaaggggta 624

                                                                       
Query: 425 gggatttccagggtgggtatgtagcattgtctatagcaagggtacctaagaatgcctcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggatttccagggtgggtatgtagcattgtctatagcaagggtacctaagaatgcctcct 684

                 
Query: 485 ttgcct 490
           ||||||
Sbjct: 685 ttgcct 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_l08.g1 MSMg01no379_l08.g1 CHROMAT_FILE:
MSMg01no379_l08.g1 PHD_FILE: MSMg01no379_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:32 2005
         (463 letters)



>mm_chr14_22118657_22119519
          Length = 863

 Score =  874 bits (452), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagaaacacacagacgctaggggaaaggcagaggaactacaaaggctgaaggaggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tttagaaacacacagacgctaggggaaaggcagaggaactacaaaggctgaaggaggggg 604

                                                                       
Query: 61  agaaagaagttagacttcccaaaagaagttactgttaaaatatgacagagcaacgatccc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 603 agaaagaagttagacttcccaaaagaagttactgttaaaatatgacagagcaacgatctc 544

                                                                       
Query: 121 aagactccagaagagatgtatttcttcctagaatgccacatgaatgaggaagtgaaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aagactccagaagagatgtatttcttcctagaatgccacatgaatgaggaagtgaaatgt 484

                                                                       
Query: 181 tagacatgtaggtttcagagactctttcttcctgtattctttctcagaaagaagagtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tagacatgtaggtttcagagactctttcttcctgtattctttctcagaaagaagagtgag 424

                                                                       
Query: 241 ggggaaatgcaagctatcaaaaaccaaaacaaaccaatacccaaaccaacacatttaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggggaaatgcaagctatcaaaaaccaaaacaaaccaatacccaaaccaacacatttaaat 364

                                                                       
Query: 301 gaggagagtatgtacgtaggagtcctgcaatggaacacttagcacagatctgacacgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaggagagtatgtacgtaggagtcctgcaatggaacacttagcacagatctgacacgaag 304

                                                                       
Query: 361 gggatttagagctgtgaggatgcttagagcagaagaatgaagggtctcanaagcaaggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 gggatttagagctgtgaggatgcttagagcagaagaatgaagggtctcaaaagcaaggtc 244

                                                      
Query: 421 ctcaagacgaacagggcaagcagacacggcatgaaacgctagt 463
           ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 243 ctcaagacgaacagggcaagcagacacggcatgaaacactagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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