BAC Information

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BAC

Clone NameMSMg01-379P12
Chromosome14 (Build37)
Map Location 67,397,847 - 67,398,091
singlet/doubletsinglet
Overlap genenone
Upstream genePbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a
Downstream geneENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379P12.T7 (MSMg01no379_p12.b1)MSMg01-379P12.TJ (MSMg01no379_p12.g1)
ACCAG484455AG484456
length748751
length of high quality
(start - end)
244 (65 - 308)59 (424 - 482)
definitionCHROMAT_FILE: MSMg01no379_p12.b1 PHD_FILE: MSMg01no379_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:53 2005CHROMAT_FILE: MSMg01no379_p12.g1 PHD_FILE: MSMg01no379_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAACCGCGGAATTCCAC
ACTTTCCATCAACACACACAGCAAGAGCTGCTGTTGTAGGAAAGATTGAG
CCCAACATCCTTGCTCTGCTCGGACAGCAAACCTCAAACTGTACCATGTT
CCAAGTGGCACAGCGCAGACATCATCGCAGCTTCACTGCACGTTCAAGGC
CAACTTGAGCTACATGATAACCAAAATAAAATGAAATGTGCAGTTCTGAC
CCATTTACTCAACTAAATGGGGACTGGGAATAAGGAAGTGACTGTGGCAA
GCTAAGACCCCTTTTTCAAACTGTTCTGTCGCTTGGGCCTTATGACCCAG
AATGTCTATGATGCATGAAATCTCCATGGAAACCAGCAGGATTGTGTGAA
GACTCCCACATGCTTCAGTGTCGGCAGCATCCTGCAGGGCTGGGAAGCTT
CGGATCAGAGCACTGTTCTCGCTGTCAGCCAAACATTTCCCACTTCAGAA
ATGGCTCCCAGCTTACAGCCAGGCCTGCTAAAGACTGAACCCCCTGGTCA
TGACACATCCTGTGGCTTTGTGTAGCCTGAGCTGCCACTTTGAATGGGAC
GTGGTAGGACACAGTACCTCCCAGGGCTAACAATTGTAAGATCTGGTATG
CACTTGCGTAAGTACAAACTGTAAACCGAATCCTAGTTGTATCTTCCTCA
ATAAATTATCACTCCCCACGTTTATTTCTTCCGTTAGTTTTAAACCCC
TTTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATCTTCCCAGGGTCAGCTTAGTTCAGGTTCCTAAAT
ATGATGAGGAATGGCAAAGGGGCTCCCTGGCCAGCTAGTCCTGCTGGGAA
AGGGGGTCCAGTTAAAAGAACTACCTTACCAAATAAGATGGAGAACAAAG
AAGAAAGTAGTGAGAGGCACTTTCAGCTTCTACAGAGACATACATTTGAA
CCTGGACAGATGTGTACACCCAACACACATAACCCAACACTGCTACCAAA
TAGGTGCCTTCTATATTTGTGTCATTTTGACTTATAATTGGTTATTAGGA
CATGTTTCTTTTGTGACCTACAATGTACATGGAAGGGTTCTTCGAACTGT
TGGACACCAGCCCTAGCTGATGCATATTTTCTCTTCTCCTTTTCCCTTTC
ATTTCTACCTCCTCTTCCCTACTTTTCTCTTGGCGCTGAGGACTGAACCC
AATGCCTCTAACCTGCTGTACATGAATTGCCCTGCTGACCTGTCTCCCTA
CCCCCCTTGCGACTCCCTGGTTTTGGAACTGTCCCGCCGAACTCCCAAAA
CCGCATCTTAACCTTGTTGTGCCCCCCGTGTTAACACCCCCACTCGCATA
CTTCCTTGACCCCCCACCCACAACCTTTTTTGATTTTCTCACCTTCACTC
CTATTAGTTTTTCATCCCCCATAACCCCGTTTTACCCTATACCATCCATC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_p12.b1 MSMg01no379_p12.b1 CHROMAT_FILE:
MSMg01no379_p12.b1 PHD_FILE: MSMg01no379_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:53 2005
         (244 letters)



>mm_chr14_67397647_67398291
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacagcaagagctgctgttgtaggaaagattgagcccaacatccttgctctgctcgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacagcaagagctgctgttgtaggaaagattgagcccaacatccttgctctgctcgga 260

                                                                       
Query: 61  cagcaaacctcaaactgtaccatgttccaagtggcacagcgcagacatcat-cgcagctt 119
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 261 cagcaaacctcaaactgtaccatgtcccaagtggcacagcgcagacatcatccgcagctt 320

                                                                       
Query: 120 cactgcacgttcaaggccaacttgagctacatgataaccaaaataaaatgaaatgtgcag 179
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgcacgttcaaggccagcttgagctacatgataaccaaaataaaatgaaatgtgcag 380

                                                                       
Query: 180 ttctgacccatttactcaactaaatggggactgggaataaggaagtgactgtggcaagct 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ttctgacccatttactcaactaaatggggactggggataaggaagtgactgtggcaagct 440

                
Query: 240 aagac 244
           |||||
Sbjct: 441 aagac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)