Query= MSMg01no380_b13.b1 MSMg01no380_b13.b1 CHROMAT_FILE:
MSMg01no380_b13.b1 PHD_FILE: MSMg01no380_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:03 2005
(514 letters)
>mm_chr14_104061321_104062234
Length = 914
Score = 944 bits (488), Expect = 0.0
Identities = 506/512 (98%), Gaps = 2/512 (0%)
Strand = Plus / Plus
Query: 1 gccaagccgccctggacctggtctcctgtgctagccagccatgctgagactgaggcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccaagccgccctggacctggtctcctgtgctagccagccatgctgagactgaggcctgg 260
Query: 61 gctgcacacctgtcccag-cgtggtttcttctgtaggcacatttggctgcccttcttcag 119
|||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcacacctgtct-aggcttggtttcttctgtaggcacatttggctgcccttcttcag 319
Query: 120 gattctcttcaggttaactcttccagggccggttcagattctcagttcttaaagggtagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gattctcttcaggttaactcttccagggccggttcagattctcagttcttaaagggtagt 379
Query: 180 taagcacctgcccaccgcacaagatcacaaatcctggaaaatgctgtgagctttgcagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taagcacctgcccaccgcacaagatcacaaatcctggaaaatgctgtgagctttgcagaa 439
Query: 240 agttcccaagctgtggcttgaagctatgagaataaactaacaatctagcccttctgaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttcccaagctgtggcttgaagctatgagaataaactaacaatctagcccttctgaaga 499
Query: 300 aaatagagagggaagagtgttttgtgagatattcttaaggagataacaaccacactgtcg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaatagagagggaagagtgttttgtgagatattcttaaggagataacaaccacactgtcg 559
Query: 360 ctgtcttaaatattccattgaaataatgttgaaagtaaaataattgctcttttcctagta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgtcttaaatattccattgaaataatgttgaaagtaaaataattgctcttttcctagta 619
Query: 420 tctccaagtcccatgtctgttggtataaaggtagttaataaaggatggagggacttttag 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctctaagtcccatgtctgttggtataaaggtagttaataaaggatggagggacttttag 679
Query: 480 tttttgagcactgatctcactgtacagcctta 511
||||||||||||||| ||||||||||||||||
Sbjct: 680 tttttgagcactgatttcactgtacagcctta 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_b13.g1 MSMg01no380_b13.g1 CHROMAT_FILE:
MSMg01no380_b13.g1 PHD_FILE: MSMg01no380_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:03 2005
(519 letters)
>mm_chr14_104248375_104249293
Length = 919
Score = 961 bits (497), Expect = 0.0
Identities = 513/519 (98%), Gaps = 2/519 (0%)
Strand = Plus / Minus
Query: 1 tgaatatatttttaatatgatgtcaaagaagtctacgcacagattaaaatctatagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgaatatatttttaatatgatgtcaaagaagtctacgcacagattaaaatctatagacca 652
Query: 61 agtcatacataattttcttcaataaaatttgtgttaaaacgtgttaaagaaacacaaaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agtcatacataattttctttaataaaatttgtgttaaaacgtgttaaagaaacacaaaat 592
Query: 121 tatttaaatactagaaaaaatcattgtgttcaaataatttacaaaggaagtgtggctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tatttaaatactagaaaaaatcattgtgttcaaataatttacaaaggaagtgtggctttt 532
Query: 181 ccaattttactatttcctataagcagaaaataagtgattgcctcctgcaatcacccagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ccaattttactatttcctataagcagaaaataagtgattgcctcctgcaatcacccagcc 472
Query: 241 taccaaagcttcattatattggaggcatagactatagataggaaccactaatcattgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taccaaagcttcattatattggaggcatagactatagataggaaccactaatcattgata 412
Query: 301 aaatttcaaatcttagattctctcttatgagcatacctttaattacaaaccacatgccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaatttcaaatcttagattctctcttatgagcatacctttaattacaaaccacatgccaa 352
Query: 361 cttcagaatctgatcatctgtataaaatcaataaaacggaatcaatatcatatggatgtt 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cttcagaatctgaccatctgtataaaatcaataaaacggaatcaatatcatatggatgtt 292
Query: 421 ttagcaaaaatagtaccaaaatctaaggaatcaaatcttgctattttgcaagaatacatg 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 ttagcaaaaatagtaccaaaatctaaggaatcaaattttgctattttgcaagaatacatg 232
Query: 481 gagtttgaaaggggggaagtagaatatatatatctgtaa 519
||||||||||||||| ||||||||||||||| ||||||
Sbjct: 231 gagtttgaaagggggaaagtagaatatatat--ctgtaa 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
