BAC Information

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BAC

Clone NameMSMg01-380N23
Chromosome14 (Build37)
Map Location 67,470,597 - 67,634,074
singlet/doubletdoublet
Overlap geneDpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
Upstream geneCcdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366
Downstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N23.T7 (MSMg01no380_n23.b1)MSMg01-380N23.TJ (MSMg01no380_n23.g1)
ACCAG485146AG485147
length755761
length of high quality
(start - end)		455 (42 - 496)428 (72 - 499)
definitionCHROMAT_FILE: MSMg01no380_n23.b1 PHD_FILE: MSMg01no380_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:04 2005CHROMAT_FILE: MSMg01no380_n23.g1 PHD_FILE: MSMg01no380_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,470,597 - 67,471,043)(67,633,649 - 67,634,074)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATAGCATAAGTCACTATTGGGGACTGCTGTCCAAACAGCACTCAGGAAT
GCAGGAGAAATCTAGGTCATGGAGGCAGGGCTACTGTGGAGAGACCAAAG
GCAGTCGGTAGACCACCGTGGTGGCAAGCCTCTCCCCACGGGTGTAGCCT
CCCTCTTAGTGGGAGATGTCCAATAGCTGATCATTTTCGCCCTCTATATT
ACAGAAAAGGGAAAGGCACTTTGAAGTGATGGTTGGTTGGAAATGCAGGA
TAAAGCCTGAATACTAGAATCTTCCTGCTGCTGGCAAGACAGGGGACTGG
ACAGAAGCCTGATGCTGCCGGCCAACTCAAAGTAAGTAAGGGATGTGCTC
AGGGTTTCTGTGGCGTTCACGCACATTCTAATTGTTAAAAAGCAAGCAAA
CAAACGAAAAAATCAAACCCTTTTAGCTGAGAAAACAGCTTAGTTGATTA
AGTGCTTGCCGTACAAATCTGAAGAGCTGAGATCAATCCCCAGAGTAAAT
GCAGAAAATTTGGACGTGGTGGGGGGCAATAAAAATCCCAGCCTGCAGAT
GTGGACTTCTGTGAACCTCTAAGGCTGGGTGCCCCGCTTCCTGGTGGGGG
ACTCCTCTGACCCCATTTGCAAAGGGGGGAGTTGGGATGGACCTTTCTTT
ACTCCCGCAAGGAAGAGGGCCGAGACACTCCTGGGTCCTCCCACATTCTA
TCCAG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCTGGAAGTAACGTGGTAGATGAAACC
GGATGCTGCACTAAAGAGCTGTTTTGTACTAATTGCTGTGGAATCACTGA
ATTGTACTTTGCCATAGATACATCTTTTGGTTTTCCAAAGGTATATTCAG
GACAAGCTTTTAAAGGTACAGTGATGCATGGACTGCAACAGCTGCGTAAG
CACCAGATGTGTGATGATCCACAGTGTTCCAGTGCTGAGGCCCTAGCCAA
AGATGGAGAGTGTCCCAGTTAGTGTGGGATGGACCGTGGTCAGTCCTGCA
GGAAGCTTTATGGAGAGAGAATGGACTTTATTTTTAAAAGATGAATGAGC
AGGCATTTATATGAGAATGGTAGTATATTTTGGTTGAACAGTAATATAAC
AATGTTGAATATAGAGGACTCTGCGTGCTTATATATTCCCACTGCCTATT
GTTCTTCAGTAATGAAAATGATTAAACAACTCCACCACAATTCCCTCTAC
ACTTACACATATATTATGTCTTGTACGTTATTATTTTTAGCGCCCCGGAG
AATTTTTATGAACAAAAGTACCGAATCTTTTGGAGGTAAATTTGAATTTG
GTTTTAAACAAAAGGCGGAAAATTCTTAAAGGCCCCTTTTATAATTTTTT
GGGGTGGGGGTGCGTGCCTCCTACCCCTTTCTTTTTATTTCGCCTGCTAC
CTCCACACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n23.b1 MSMg01no380_n23.b1 CHROMAT_FILE:
MSMg01no380_n23.b1 PHD_FILE: MSMg01no380_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:04 2005
         (455 letters)



>mm_chr14_67470393_67471247
          Length = 855

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagcataagtcactattggggactgctgtccaaacagcactcaggaatgcagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagcataagtcactattggggactgctgtccaaacagcactcaggaatgcagg 264

                                                                       
Query: 65  agaaatctaggtcatggaggcagggctactgtggagagaccaaaggcagtcggtagacca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaatctaggtcatggaggcagggctactgtggagagaccaaaggcagtcggtagacca 324

                                                                       
Query: 125 ccgtggtggcaagcctctccccacgggtgtagcctccctcttagtgggagatgtccaata 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatggtggcaagcctctccccacgggtgtagcctccctcttagtgggagatgtccaata 384

                                                                       
Query: 185 gctgatcattttcgccctctatattacagaaaagggaaaggcactttgaagtgatggttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctgatcattttcgccctctatattacagaaaagggaaaggcactttgaagtgatggttg 444

                                                                       
Query: 245 gttggaaatgcaggataaagcctgaatactagaatcttcctgctgctggcaagacagggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttggaaatgcaggataaagcctgaatactagaatcttcctgctgctggcaagacagggg 504

                                                                       
Query: 305 actggacagaagcctgatgctgccggccaactcaaagtaagtaagggatgtgctcagggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actggacagaagcctgatgctgccggccaactcaaagtaagtaagggatgtgctcagggt 564

                                                                       
Query: 365 ttctgtggcgttcacgcacattctaattgttaaaaagcaagcaaacaaacgaaaaaatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctgtggcgttcacgcacattctaattgttaaaaagcaagcaaacaaacgaaaaaatca 624

                                      
Query: 425 aacccttttagctgagaaaacagctta 451
           |||||||||||||||||||||||||||
Sbjct: 625 aacccttttagctgagaaaacagctta 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_n23.g1 MSMg01no380_n23.g1 CHROMAT_FILE:
MSMg01no380_n23.g1 PHD_FILE: MSMg01no380_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:04 2005
         (428 letters)



>mm_chr14_67633447_67634274
          Length = 828

 Score =  793 bits (410), Expect = 0.0
 Identities = 422/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tctggaagtaacgtggtagatgaaaccggatgctgcactaaagagctgttttgtactaat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tctggaagtaacgtggtagatgaaaccggatgctgcactaaagagctgttttgtactaat 569

                                                                       
Query: 63  tgctgtggaatcactgaattgtactttgccatagatacatcttttggttttccaaaggta 122
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 568 tgctgtggaatcactgaattgtactttgccatagatacgtcttttggttttccaaaggta 509

                                                                       
Query: 123 tattcaggacaagcttttaaaggtacagtgatgcatggactgcaacagctgcgtaagcac 182
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 508 tattcgggacaagcttttaaaggtacggtgatgcatggactgcaacagctgcgtaagcac 449

                                                                       
Query: 183 cagatgtgtgatgatccacagtgttccagtgctgaggccctagccaaagatggagagtgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagatgtgtgatgatccacagtgttccagtgctgaggccctagccaaagatggagagtgt 389

                                                                       
Query: 243 cccagttagtgtgggatggaccgtggtcagtcctgcaggaagctttatggagagagaatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cccagttagtgtgggatggaccgtggtcagtcctgcaggaagctttatggagagagaatg 329

                                                                       
Query: 303 gactttatttttaaaagatgaatgagcaggcatttatatgagaatggtagtatattttgg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 328 gactttatttttaaaagatgaatgagcaggcatttatatgagaatggtagtatattttga 269

                                                                       
Query: 363 ttgaacagtaatataacaatgttgaatatagaggactctgcgtgcttatatattcccact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgaacagtaatataacaatgttgaatatagaggactctgcgtgcttatatattcccact 209

                 
Query: 423 gcctat 428
           ||||||
Sbjct: 208 gcctat 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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