BAC Information

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BAC

Clone NameMSMg01-381C17
Chromosome14 (Build37)
Map Location 121,925,333 - 121,925,719
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577
Downstream geneDock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381C17.T7 (MSMg01no381_c17.b1)MSMg01-381C17.TJ (MSMg01no381_c17.g1)
ACCAG485373AG485374
length713802
length of high quality
(start - end)		494 (41 - 534)490 (69 - 558)
definitionCHROMAT_FILE: MSMg01no381_c17.b1 PHD_FILE: MSMg01no381_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:29 2005CHROMAT_FILE: MSMg01no381_c17.g1 PHD_FILE: MSMg01no381_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGGCGCTATACGAATCACTATTTCAAGAGGATCCGCGGAATTCA
TGCAGTTCCCTCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCG
CGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCCTGCGCCGGTGAA
ACTCCCGTCCCGAGTTTCCTCCCAGGTTTTTTCTTCCCGGATTTTTTCTC
GTCCCGGAATTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCG
TTCTCACGCCCGGCCAGGAAAGATGCAACAGACCAGAATCTTCTGCGGCA
AAACTTTATTGCTTACTTCTTTGGGAGCCAGGAGAGCAAGCGCCCAGCGC
CCAGCCCCAAAAACGAAAGCCCCTCAATAATTTTAGGAGCCAGAGCTCCG
GCGCGCCAAAGCGCAGAGCGTGCTCTATTGTTTACATCTTTAGGCAGCGA
GCGAGCGCAGGGCGCGCAGAGCCAGAGAGATGCCAGCGAGCGCGAATGGC
GGAAAACCCCGTCCCCTTTAAGGAGGAGTGACCCTTCACTTAGGACGCAT
CACTCCCTGATTGGCTGCAGCCCATGTNCGAGCTGACGTTCACGGGAAAA
GCAGAGCACCAGTAGTCCTAAAATACCCTTGTGTCATGCGCAGATTATTT
GTTTTACACTTATAAACAAGATGTCCACGCCCTCTTGTGGATGCGGAATG
GGGGGGCGCGTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAACCTCCTAGACTCTTACTTATGTCACCTGT
CTCCTATAGGGCATTCCTGCTATGTCCCATCAGGTTCTTAGGGACTGCTG
CCTTAGTCTTGGATCACTCTAGTGTGGAAAAACGATGGCTTGACTCAGGC
AGAGAAGCCACACTCATCCATGGGCATGGGTCTCAACAGGCTTCAACATT
TTCCCAGGGGAGAAGCATCTTCAAGTCTCTGTCCCACAGAGGTCACCTGT
GCATCAGTCAGGTGTCATGACAACACCAGCATTGACACTGTCACACAAAT
AGCCCATGGGACTATAGTCATGTCCCTCTTATGGATGGACACAAAGATGG
GACTTTGTGCACTCAAATCTGACCAGCTTTACTGAAGTGAAATTACAGAG
AGAGGGTTTTCTTTGATGAGTGTTAGAAATGATTGGTCTGGGCTTCCAAA
ATAGCCATGCCACAGCCATAAACACTACATCACACACACACACACACACA
CACACCAATCTCGGCATTTTCCGGAAGCCAAGAAGGACATCAGTTCCCTA
ACCCATCTTTCATTTGGAAGGGTTAGGACTCCCAATGAAACCCTCCAACA
TGGAGAATCCCTTGAGGCACTAACACTGGCCAGCCATTTGTTTAAAAAAA
ATGAAACTGGGGGCCCCCGGAAGGGGATCCCGGATCCTTGACCCCCGTGG
GGAATAAAACACTTGGGGGGGTGGCTCTGTGGGCACGGAATATTTAAACT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_c17.g1 MSMg01no381_c17.g1 CHROMAT_FILE:
MSMg01no381_c17.g1 PHD_FILE: MSMg01no381_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:29 2005
         (490 letters)



>mm_chr14_121925031_121925922
          Length = 892

 Score =  683 bits (353), Expect = 0.0
 Identities = 378/387 (97%), Gaps = 2/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 103 agtgtggaaaaacgatggcttgactcaggcagagaagccacactcatccatgggcatggg 162
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 303 agtgtggaaaaacgatggcttgactcaggcagagaagccacactcatccatgtgcatggg 362

                                                                       
Query: 163 tctcaacaggcttcaacattttcccaggggagaagcatcttcaagtctctgtcccacaga 222
           ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 363 tctcaacagacttcaacattttcccaggggagaaacatctccaagtctctgtcccacaga 422

                                                                       
Query: 223 ggtcacctgtgcatcagtcaggtgtcatgacaacaccagcattgacactgtcacacaaat 282
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggtcacctgtgtatcagtcaggtgtcatgacaacaccagcattgacactgtcacacaaat 482

                                                                       
Query: 283 agcccatgggactatagtcatgtccctcttatggatggacacaaagatgggactttgtgc 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agcccatgggactatagtcatgtccctcttatggatggacacaaagatgggactttgtgc 542

                                                                       
Query: 343 actcaaatctgaccagctttactgaagtgaaattacagagaga--gggttttctttgatg 400
           |||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||
Sbjct: 543 actcaaatctgaccagctttactgaagtgaaattacagagagaaagggtttcctatgatg 602

                                                                       
Query: 401 agtgttagaaatgattggtctgggcttccaaaatagccatgccacagccataaacactac 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agtgttagaaatgattggtctgggcttccaaaatagccatgccacagccataaacactac 662

                                      
Query: 461 atcacacacacacacacacacacacac 487
           |||||||||||||||||||||||||||
Sbjct: 663 atcacacacacacacacacacacacac 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 892
Length adjustment: 10
Effective length of query: 480
Effective length of database: 882
Effective search space:   423360
Effective search space used:   423360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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