BAC Information

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BAC

Clone NameMSMg01-381K19
Chromosome14 (Build37)
Map Location 19,229,253 - 19,416,756
singlet/doubletdoublet
Overlap geneLOC627717, LOC238963, Ube2e2
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381K19.T7 (MSMg01no381_k19.b1)MSMg01-381K19.TJ (MSMg01no381_k19.g1)
ACCAG485759AG485760
length566788
length of high quality
(start - end)		531 (36 - 566)533 (68 - 600)
definitionCHROMAT_FILE: MSMg01no381_k19.b1 PHD_FILE: MSMg01no381_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:10 2005CHROMAT_FILE: MSMg01no381_k19.g1 PHD_FILE: MSMg01no381_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,416,300 - 19,416,756)(19,229,253 - 19,229,785)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTC
TGTTATAACCAGTGTCTTAGATGTTTGCTTCCTCCAAATTATCTACACCT
TTGTGTGTGAATTCACTAAGGAATTGGGCAAAAGTATCAGAGTTGTGCAT
CTGGCCATTGTTAGTGGAAGACCCAGAAAACACAAACGGTGAGAGAATGT
TCAGTGGGACTTGCCTACAATCCCTGAACATAGGGGATGAGGCAGGAAAA
TTGTTAGTTTGCAGCTAGCCTAAGCTACATAATGAGCCTGTGTAGGAGAA
AAAATAAAAAGGAAATAAGAAATTGGAAAAGAGACACAAATTCTCAGTAT
AAACAAAGACCTTTTGCTCACTCTGCTCTGTCTCCCCAGAGCTGCTCATG
GGGCAGCTCACTGCCTTGAGAATGTCTTGAGTCAAGAACATTTGCGTTGG
ATTTTAATGGATGTGTTTTTCGTTACTCTTTAAATGAAGGCAATTAAAGA
TGGTGCTGATTTAAAACCTTGAGTTGTTAATTCTTTCCATGCTAGGATTA
AAGGAAATTTCTTTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGATAACAAGTATTTGGGAAGGCAGCCAAATGA
TGATGTGTTTGGGATTAATTTTCTTTAAAGGAAAACAAGTTAATTACTCA
GTAAATACTGTTTGCTAGACAAGTTCTCTCAAGACTTGGGAGAAAAAAAA
TGATAAAAAATTGCTCATTAGTAATGCAGACAAAGTCTATTTTTGTTGTT
GTTGTTTAAAAGTCACCTACTTTAGCTCAAGAGGCAAATATTTGCTTTTA
TGTATTAGCCTTAAATATTAATATATTTGAATATAGATTAGCCTGACAGT
TAATTAGTATTAACATCCAAGGTTCACTGAAACTGGAACTAGAATTAACC
AAAGTCAGTGTTCACTAATGCAGGAGAAAAATGTCTGAGCATTATTAAAA
AGTTGAAGTGCTTAGAGGGCTAGAACAGGTATCTGGGAGTCTGGAGACCC
TTTGTAGCTTCAGAGCTAGCTAAGCTGCTATTCTGCATAGTGACCATATG
ATTTGATTTTACTTAAATGCCAGTTTTCTTCCCTGCCTGCCCATCTGCTG
TGTGTGAGCAAGGTGAGGAGGTAAACTGGGTAACTGGACTAGGCTTCCTT
CCCATACAAATACATAAGCTGAGGGAGCTGAATTGTCCACTCCCTGTCGG
AAACTCCTCTAGTCCAGGCTGGGCTCAACACCTATATAAACCCAAGCCTC
ACCCTGAATTATTTTTGGCCCTACCAACCTGGGAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_k19.b1 MSMg01no381_k19.b1 CHROMAT_FILE:
MSMg01no381_k19.b1 PHD_FILE: MSMg01no381_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:10 2005
         (531 letters)



>mm_chr14_19415826_19416756
          Length = 931

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 73  tgaattcactaaggaattgggcaaaagtatcagagttgtgcatctggccattgttagtgg 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tgaattcactaaggaattgggcaaaagtatcagagttgtgcatctggccattgttagtgg 872

                                                                       
Query: 133 aagacccagaaaacacaaacggtgagagaatgttcagtgggacttgcctacaatccctga 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 aagacccagaaaacacaaacggtgagagaatgttcagtgggacttgcctacaatccctga 812

                                                                       
Query: 193 acataggggatgaggcaggaaaattgttagtttgcagctagcctaagctacataatgagc 252
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 acataggggctgaggcaggaaaattgttagtttgcagctagcctaagctacataatgagc 752

                                                                       
Query: 253 ctgtgtaggagaaaaaataaaaaggaaataagaaattggaaaagagacacaaattctcag 312
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 751 ctgtgtaggagaaaaaataaaaaggaaagaagaaattggaaaagagacacaaattctcag 692

                                                                       
Query: 313 tataaacaaagaccttttgctcactctgctctgtctccccagagctgctcatggggcagc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tataaacaaagaccttttgctcactctgctctgtctccccagagctgctcatggggcagc 632

                                                                       
Query: 373 tcactgccttgagaatgtcttgagtcaagaacatttgcgttggattttaatggatgtgtt 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcactgccttgagaatgtcttgagtcaagaacatttgcgttggattttaatggatgtgtt 572

                                                                       
Query: 433 tttcgttactctttaaatgaaggcaattaaagatggtgctgatttaaaaccttgagttgt 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tttcgttactctttaaatgaaggcaattaaagatggtgctgatttaaaaccttgagttgt 512

                                                
Query: 493 taattctttccatgctaggattaaaggaaatttcttt 529
           |||||||||||||||||||||||||||||||||||||
Sbjct: 511 taattctttccatgctaggattaaaggaaatttcttt 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_k19.g1 MSMg01no381_k19.g1 CHROMAT_FILE:
MSMg01no381_k19.g1 PHD_FILE: MSMg01no381_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:10 2005
         (533 letters)



>mm_chr14_19229053_19229985
          Length = 933

 Score =  992 bits (513), Expect = 0.0
 Identities = 528/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agataacaagtatttgggaaggcagccaaatgatgatgtgtttgggattaattttcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agataacaagtatttgggaaggcagccaaatgatgatgtgtttgggattaattttcttta 260

                                                                       
Query: 61  aaggaaaacaagttaattactcagtaaatactgtttgctagacaagttctctcaagactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaaaacaagttaattactcagtaaatactgtttgctagacaagttctctcaagactt 320

                                                                       
Query: 121 gggagaaaaaaaatgataaaaaattgctcattagtaatgcagacaaagtctatttttgtt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagaaaaaaaatgataaaaaaatgctcattagtaatgcagacaaagtctatttttgtt 380

                                                                       
Query: 181 gttgttgtttaaaagtcacctactttagctcaagaggcaaatatttgcttttatgtatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgttgtttaaaagtcacctactttagctcaagaggcaaatatttgcttttatgtatta 440

                                                                       
Query: 241 gccttaaatattaatatatttgaatatagattagcctgacagttaattagtattaacatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccttaaatattaatatatttgaatatagattagcctgacagttaattagtattaacatc 500

                                                                       
Query: 301 caaggttcactgaaactggaactagaattaaccaaagtcagtgttcactaatgcaggaga 360
             ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tgaggttcactgaaactggaactggaattaatcaaagtcagtgttcactaatgcaggaga 560

                                                                       
Query: 361 aaaatgtctgagcattattaaaaagttgaagtgcttagagggctagaacaggtatctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgtctgagcattattaaaaagttgaagtgcttagagggctagaacaggtatctggg 620

                                                                       
Query: 421 agtctggagaccctttgtagcttcagagctagctaagctgctattctgcatagtgaccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtctggagaccctttgtagcttcagagctagctaagctgctattctgcatagtgaccat 680

                                                                
Query: 481 atgatttgattttacttaaatgccagttttcttccctgcctgcccatctgctg 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgatttgattttacttaaatgccagttttcttccctgcctgcccatctgctg 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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