BAC Information

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BAC

Clone NameMSMg01-382K05
Chromosome14 (Build37)
Map Location 35,507,920 - 35,687,981
singlet/doubletdoublet
Overlap geneWapal, LOC100041341, Grid1
Upstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik
Downstream gene4930596D02Rik, LOC100040277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382K05.T7 (MSMg01no382_k05.b1)MSMg01-382K05.TJ (MSMg01no382_k05.g1)
ACCAG486495AG486496
length730732
length of high quality
(start - end)		537 (58 - 594)451 (61 - 511)
definitionCHROMAT_FILE: MSMg01no382_k05.b1 PHD_FILE: MSMg01no382_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:26 2005CHROMAT_FILE: MSMg01no382_k05.g1 PHD_FILE: MSMg01no382_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,687,445 - 35,687,981)(35,507,920 - 35,508,367)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGCCCC
ATCTCGGACCACTGTGTGGCATCCTGAGAGCCCCACCCTCTCATCTTGAT
CCTGTCCTTGGTGAAGTACAAAACAGCCTTCTCAAAGAGCCTTCAAACAC
TTTTGAATGACGCTGTAGTTATTAGAGGCAGCAGGAACTGGGATCCACTC
TAATGAAGCCAGCTCCAGCTCTGTATGGAGAATAGGCTTAGAACCCAGAG
TTTGGCGCACAGAACTAGAGCCAGGTGAGAAGGTTAGAGAAGACAGACCC
ATAGCATCAGGAATAGTGCAGGAGACAGAGCAGTAGCAGTTATATAGGCT
CAAATGCCACCTCTACCATACACCAGCTAACTGGTGTCAGAGACTGTGGA
GCTGAGCCATGGATGACGTTCGAGTCGAGAGTGTGCCATGCCAGCTCCCC
TTATCACTAGTCCATTCAGGATGGATCAAGCATGTGTAGGCCTGAAAGGT
CCTCCTACCTTCTCAGAAGGCGTAAGGGAAGAAATCTTTATTTGAGAAAT
AAAACAGCCTATCTCACATTACAGGAGCAGAAAAGAGACAGCTGGCCCTG
TCACCATGGAGACCAAGTCACAGGTAATAGGCTAGCTCAGAGGTAACTCT
GGTCTGTGTACCAGATGCCTCTGAATCTGGAGGCGGTGTAGGTACCCTGA
AAGATCCTTGTTTAAAGTCCTTCTCATTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGGCCAGCTAATTATAAGCACCCATTCTCAGTAAAAGAG
AAAATGTTTGATTTTTTGCTGATAGTACAAAAATACAACTAGAAAAGATA
TGTAATAGGTTTTGAAGTAAGAGAATAGGGTTAGAGTACTTCATCAACCA
CTACTATTTTTAATCCTTTATTATTTTCTCCAACATTAATGTTTTTAAAA
AACCTTGTGTTTTCTGATAACTTGAAACACTGGAAAGCTAGCTAGTTTTG
ATTACCATTTCAGAAAACTTGGATTTTACAGAGGACTTGCCTGGTGTGCC
TGAGAGTGTGAAGAAGCCCATAAGTAAACAAGGAGATAAATCCAAGGAAA
ATACCAGAAAGATTTTTAGTGGCCCCAAACGGGTAAGTAAAGCATTAACA
CTGGTGTTTTTTTTTAATAAAAATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTTATTNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNNTTTTGTTT
TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTATTTTTTTATTATTTTGTTT
TTTTATTTTTTTATTATTTTTGTGGGTATTTTTTTATTTTTTTATTTTTA
TATGCTNAATAATATATTTTATATGTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_k05.b1 MSMg01no382_k05.b1 CHROMAT_FILE:
MSMg01no382_k05.b1 PHD_FILE: MSMg01no382_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:26 2005
         (537 letters)



>mm_chr14_35687245_35688181
          Length = 937

 Score =  969 bits (501), Expect = 0.0
 Identities = 528/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accactgtgtggcatcctgagagccccaccctctcatcttgatcctgtccttggtgaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 737 accactgtgtggcatcctgagagccccaccctctcatcttgatcctgtccttggtgcagt 678

                                                                       
Query: 61  acaaaacagccttctcaaagagccttcaaacacttttgaatgacgctgtagttattagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acaaaacagccttctcaaagagccttcaaacacttttgaatgacgctgtagttattagag 618

                                                                       
Query: 121 gcagcaggaactgggatccactctaatgaagccagctccagctctgtatggagaataggc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 gcagcaggaactgggatccactctaatggagccagctccagctctgtatggagaataggc 558

                                                                       
Query: 181 ttagaacccagagtttggcgcacagaactagagccaggtgagaaggttagagaagacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttagaacccagagtttggcgcacagaactagagccaggtgagaaggttagagaagacaga 498

                                                                       
Query: 241 cccatagcatcaggaatagtgcaggagacagagcagtagcagttatataggctcaaatgc 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 497 cccatagcatcaggaatagtgcaggagacagagcagtagcacttatataggctcaaatgc 438

                                                                       
Query: 301 cacctctaccatacaccagctaactggtgtcagagactgtggagctgagccatggatgac 360
           |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 437 cacctctaccttacaccagctaactggtgtcagagactgtggagctaagccacggatgac 378

                                                                       
Query: 361 gttcgagtcgagagtgtgccatgccagctccccttatcactagtccattcaggatggatc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 377 attcgagtcgagagtgtgccatgccagctccccttatcactagtccattcaggatggctc 318

                                                                       
Query: 421 aagcatgtgtaggcctgaaaggtcctcctaccttctcagaaggcgtaagggaagaaatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 317 aagcatgtgtaggcctgaaaggtcctcctaccttctcagaaggcgtaaggggagaaatct 258

                                                                    
Query: 481 ttatttgagaaataaaacagcctatctcacattacaggagcagaaaagagacagctg 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttatttgagaaataaaacagcctatctcacattacaggagcagaaaagagacagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_k05.g1 MSMg01no382_k05.g1 CHROMAT_FILE:
MSMg01no382_k05.g1 PHD_FILE: MSMg01no382_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:26 2005
         (451 letters)



>mm_chr14_35507720_35508570
          Length = 851

 Score =  866 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagctaattataagcacccattctcagtaaaagagaaaatgtttgattttttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagctaattataagcacccattctcagtaaaagagaaaatgtttgattttttgct 260

                                                                       
Query: 61  gatagtacaaaaatacaactagaaaagatatgtaataggttttgaagtaagagaataggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagtacaaaaatacaactagaaaagatatgtaataggttttgaagtaagagaataggg 320

                                                                       
Query: 121 ttagagtacttcatcaaccactactatttttaatcctttattattttctccaacattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagagtacttcatcaaccactactatttttaatcctttattattttctccaacattaat 380

                                                                       
Query: 181 gtttttaaaaaaccttgtgttttctgataacttgaaacactggaaagctagctagttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttaaaaaaccttgtgttttctgataacttgaaacactggaaagctagctagttttg 440

                                                                       
Query: 241 attaccatttcagaaaacttggattttacagaggacttgcctggtgtgcctgagagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaccatttcagaaaacttggattttacagaggacttgcctggtgtgcctgagagtgtg 500

                                                                       
Query: 301 aagaagcccataagtaaacaaggagataaatccaaggaaaataccagaaagatttttagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaagcccataagtaaacaaggagataaatccaaggaaaataccagaaagatttttagt 560

                                                                       
Query: 361 ggccccaaacgggtaagtaaagcattaacactggtgtttttttttaataaaaatgtgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccccaaacgggtaagtaaagcattaacactggtgtttttttttaataaaaatgtgtgt 620

                                       
Query: 421 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 448
           ||||||||||||||||||||||||||||
Sbjct: 621 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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