BAC Information

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BAC

Clone NameMSMg01-382O09
Chromosome14 (Build37)
Map Location 21,610,493 - 21,610,666
singlet/doubletsinglet
Overlap geneCamk2g
Upstream geneNid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2
Downstream genePlau, EG620119, Vcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382O09.T7 (MSMg01no382_o09.b1)MSMg01-382O09.TJ (MSMg01no382_o09.g1)
ACCAG486693AG486694
length809837
length of high quality
(start - end)
326 (30 - 355)174 (55 - 228)
definitionCHROMAT_FILE: MSMg01no382_o09.b1 PHD_FILE: MSMg01no382_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:46 2005CHROMAT_FILE: MSMg01no382_o09.g1 PHD_FILE: MSMg01no382_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCATGTTGTATT
CGTAGACTCTGCAACTCTGAGACAGTTAAGAAAGTCCCAGTTTAGGGCTG
GAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGAAGGTCCTG
AGTTCAAATCCCAGCAACGATATGGTGGCTCACAACCATCTGTGATGAGA
CCTGATGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAATGTACTTAACT
ATAGTAAACAAATATATCTTAAAGAAAGAAAGAAAGAAAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAAAGAACGAATGAGAAAGGAAGTAAGTGCCCTTTCCCTATGTTGAGAT
TTTCCACTTTTTATATTGTTCCTTCCTAAGTTATGCCTCTCATTACTTAA
TTCCTACCTCTTCATTAATTGGGTATCAACACATTGTTACCTTACTTTTT
CTTATTTGTTCTCTTCATTTCCTTTATTCCCTATCCTATTCCTTTTTTTT
TCTCTATCTCTAATTTCACCTTATTACGTCGCATCTGTCCTTCTCTCTAA
CTTGTCTCCTAATACACTTTCTCTACTTCACTATACCCCTGTTCACTTTA
TTTATTTCTCTATCTGCTCCACTAAATCCTTTTATATTTCTCTTTTATGT
CTAACTCAATTTTCTCTTATTCTTTTTATTTCTCCCTCCTCTTTTTTACC
TTCCATCATTCTATCTATCACCCTCTCTTCTATTTTTTTGCTTTATTTTC
TTTTTTTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGAGAGATGACAGTGGGCTTCTGTCCTGTCGGCAGTTTTTCTGGA
ACCTGTTCCATGGGGCTGCGTCTGCCTCCTGGCCTGGGTATCTCTCCTTA
TCCCTATCACTGGGCGCACCTCCTGTCTCAGACTATTCATGTACATTGGC
TGTAAAGTTGACTTGTTTTCTTTCCACTGGGTACCTTGAGTCCAAGGCAG
TGTTTGTCATAGAGATATGTGGGTGTTCAGATGCCCTCCTCCTCCTCTGG
TATTTTTGTCGGACAACATTATTTTGGGTTCCCTGTCCTACATTTTCTGA
CTAATACTGTATACCTTTTCCGTCATTTTTATATTTGTAAATTCTTCTCC
ACCCTGTTCCCCTCTCCTTCTTATCCCTTTTCTTTTTACACATGCCGTCT
GCACTCCCTTTATCCCACTCTCTTCCACGTATTCATTATTTTCTTGCTTA
TGTTCTTTTCTCTAATGCCTATACCCTCCCTTATCTTCTCTACTTTTGTA
TTTTCTCTTCTCTTTTCTCCCCCTCCGCTTTTCCTCTTTTCTTTTCTTTC
TATACCACTTTCATAATATTAATTTTACACTCTTTCTCTTTTTTTCCCCC
CTCCTCTTGACCTACATAATTCTCTACTCTCCTCTCCATTACCTCCTTCC
TTTTTCCTCTTTTCCCCCCTTCTTCTTCTTACCTTACCCTTTCTATTTTT
TTTGTTTACATTTCTTCTCTCCCCCTCTTTTCGTCTCCTTTATTTCTTCT
CCTCTCCTTTCTTTCCTTTTTTCTCTTTATTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_o09.g1 MSMg01no382_o09.g1 CHROMAT_FILE:
MSMg01no382_o09.g1 PHD_FILE: MSMg01no382_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:46 2005
         (174 letters)



>mm_chr14_21610293_21610866
          Length = 574

 Score =  321 bits (166), Expect = 1e-92
 Identities = 172/174 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagagatgacagtgggcttctgtcctgtcggcagtttttctggaacctgttccatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 374 cagagagatgacagtgggcttctgtcctgtcggcagtttttctgggacctgttccatggg 315

                                                                       
Query: 61  gctgcgtctgcctcctggcctgggtatctctccttatccctatcactgggcgcacctcct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 314 gctgcgtctgcctcctggcctgggtatctctcctcatccctatcactgggcgcacctcct 255

                                                                 
Query: 121 gtctcagactattcatgtacattggctgtaaagttgacttgttttctttccact 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtctcagactattcatgtacattggctgtaaagttgacttgttttctttccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)