BAC Information

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BAC

Clone NameMSMg01-383O20
Chromosome14 (Build37)
Map Location 76,206,054 - 76,206,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30
Downstream geneLOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383O20.T7 (MSMg01no383_o20.b1)MSMg01-383O20.TJ (MSMg01no383_o20.g1)
ACCAG487483AG487484
length777785
length of high quality
(start - end)		478 (39 - 516)424 (71 - 494)
definitionCHROMAT_FILE: MSMg01no383_o20.b1 PHD_FILE: MSMg01no383_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:06 2005CHROMAT_FILE: MSMg01no383_o20.g1 PHD_FILE: MSMg01no383_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
AAGAGAAGCTCACACATTAAACTCATAGCACTTCTTTGGTCTGTGATGCC
TTGGTTATTCCCTCCCAGCAGAGAGTGCGCCCATCTTGCTGGCTCACATC
CTCCTTGCTTGGTACTTCCTCGCTCATTGCTCCACTCATTGTCCCTAGGG
TCTTTCATCCAGAGCTGAGGACTCAGCCACTGCTGGTATGATGTCATCGA
GTCTACAGTCACTTCTAGCTAGCCCCAGCTTCTGAAACGCTAGCCCCGTA
TCTATCACACCGACTACGGGACAGTTTCCCTTAAGTCTTAGATACCTTGA
ACCAGTGTGTTCAGAATCCTCATCTTCATATATAAACTGCTCCTTCCCCT
AAAATCTGCTGGGTGGAGGCTGGGCAGATGGCTCAGTGAGTCAAGTGCTT
GCTGTTGAAGTGTGAGGACCCTGGTTCATCCCTCAGTGTCCATGTAAAGG
TCAGATGTGGCATTGTGCGCCTGTAATCCCAGCACTGAGGTGGTGGAGAC
AGGAGGCCCCCTGGGGCTCTCTTGGCAGTCTGTCTGCCTGTTCTTCTGTT
CCTAGTTTGGGGAGAAACCCCACCCCCAAAACTAATGGGGGGAGACATTT
TGGAAAGATTCTCAAAACAGAACTATTGCGCTTTCCGGAAGGGTACTCTT
CCCTCACCTACTATGTTTCTTATTATTCCATAAACATTATTTTGTTGGAT
TAACATAAATGCCTAATTTTTTGCCCA

TGCTGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAGTTGTCTCTCAGAACTCAGGAAAATG
CTTTTAGTTAGGATCACAACTTTATTAAGAAGCAAGCAGCTCAGTAGGGA
CCTAAGGTGGCAGCAGAGGATGGGATGGGAGAGTAGTGTCATAAACTTCA
GGCCTTCTCTGCACTCACCTGCCTCCCAGCATCCTCAGCGCCAATGTCTG
AATTCTGTTGCTTACAGGACGTTGTGGGAGATCATTATGTGGGCAAATTT
AACGAAATCATTGGCCTTTGATCATTTAACTAAACACCAATCCCTTCCTA
CTTCCACCGGAGGTAGACATTTGCTGAAAATTCCAACCTTCTAAACCCCA
AATGGTTTCCTCTGGCAACTATCCCCACCCTCCTAAAGCCATCATTCCAC
TAGGTAGCATAAGCTGATATGTGCTCCAAAGGAGAGCCTGTCAGGAAATC
TAAGGTTTTTAGAAGCCTTGTTCTGATAGAAAAATACATTTAATTACCCA
ATTTATATCCCATTGTGACATTGCTTAATGGCCACAACACCTAGGCCTTC
CATCTTTAGGTCTGTCGGACCCTCCTCTCCCGAGGCCTTTTAAAAGGTAC
CCGGGGAATCTAAATTCGGGGTCTTTTTGCCCCTGGGGAAGGAAAAAATG
GGGCTCCCCCTTCCCCATTTTCCTCACAATTTGTAAACTGGTTCCTTGAT
CTCCCCCTACCCTACTTAAGTTAGTTTTTTGGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_o20.b1 MSMg01no383_o20.b1 CHROMAT_FILE:
MSMg01no383_o20.b1 PHD_FILE: MSMg01no383_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:06 2005
         (478 letters)



>mm_chr14_76205950_76206827
          Length = 878

 Score =  806 bits (417), Expect = 0.0
 Identities = 459/473 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcaagagaagctcacacattaaactcatagcacttctttggtctgtgatgccttg 65
           |||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||
Sbjct: 577 ggaattcaagagaagcccagacattaaactcatagcccttctttggtctgtgatgtcttg 518

                                                                       
Query: 66  gttattccctcccagcagagagtgcgcccatcttgctggctcacatcctccttgcttggt 125
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gttattccttcccagcagagagtgcgcccatcttgctggctcacatcctccttgcttggt 458

                                                                       
Query: 126 acttcctcgctcattgctccactcattgtccctagggtctttcatccagagctgaggact 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 457 acttcctcgctcattgctccactcattgtccctagggtctttcatccagagctgcggact 398

                                                                       
Query: 186 cagccactgctggtatgatgtcatcgagtctacagtcacttctagctagccccagcttct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 cagccactgctggtatgatgtcatcgagtctacagtcacttctagctagtcccagcttct 338

                                                                       
Query: 246 gaaacgctagccccgtatctatcacaccgactacgggacagtttcccttaagtcttagat 305
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaaacgctagccccgtatatatcacaccgactacgggacagtttcccttaagtcttagat 278

                                                                       
Query: 306 accttgaaccagtgtgttcagaatcctcatcttcatatataaactgctccttcccctaaa 365
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 accttgaaccagtgtgttcagaatcctcatctttatatataaactgctccttcccctaaa 218

                                                                       
Query: 366 atctgctgggtggaggctgggcagatggctcagtgagtcaagtgcttgctgttgaagtgt 425
           |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 217 atctgctgggtggagggtgggcagatggctcagtgagtcaagtgctagctgttgaaatgt 158

                                                                
Query: 426 gaggaccctggttcatccctcagtgtccatgtaaaggtcagatgtggcattgt 478
           |||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 157 gaggaccctggttcatccctcagtgtccgtgtaaaggtcaggtgtggcattgt 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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